PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000301884
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bZIP
Protein Properties Length: 466aa    MW: 51996.5 Da    PI: 6.2648
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000301884genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.96e-10180219544
                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 
                    k  rr+++NReAAr+sR+RKka++++Le+    L++  ++
  MDP0000301884 180 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLRLSQLEQE 219
                    788*************************976666655554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.9E-8176247IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.427178222IPR004827Basic-leucine zipper domain
PfamPF001701.6E-6180219IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.14E-7180223No hitNo description
CDDcd147084.50E-23180231No hitNo description
Gene3DG3DSA:1.20.5.1704.1E-7181224No hitNo description
PROSITE patternPS000360183198IPR004827Basic-leucine zipper domain
PfamPF141442.8E-31265338IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MQSFKAASTN PEFYSHSSFY FRGDDSDRNQ TRFTDLGELE QSATAFPHDD AVVLSPSSMF  60
SLKANNVGGV PDSLQYGTLN VGGCLDIXST ITGTGGGGCV DTGQQQPYMY QQQKXTTSSG  120
NGHFENWGDN SAMADNSQQT DTSTDVDTDD KNHLHGVQHG ALMVVDSTEQ AKERTTGDQK  180
TLRRLAQNRE AARKSRLRKK AYVQQLENSR LRLSQLEQEL QRARQQGIYI ADGLPGDHGH  240
SVAGNGALTF NLEYARWLEE HQRLIHDMRS AVNSHMGDNE LRILVDSVMT HYDEIFRLKS  300
IAAKIDVFHM LSGMWKTPAE RCFMWLGGFR SSELLKILGN HLEPLTDQQL MGICNLQQSS  360
QQAEDALSQG MEALQQSLVE TLSSPIHCPT GSDNVADYMG QMAIAMGKLA TLENFLHQAD  420
LLRQQTLQQL HRILTTRQAA RALLVISDYF SRLRALSSLW QARPRD
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the apical meristem, the floral meristem, each whorl of organ primordia, and in ovule primordia during wild-type flower development. {ECO:0000269|PubMed:9990857}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269|PubMed:19395638, ECO:0000269|PubMed:19395639, ECO:0000269|PubMed:9990857}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7700210.0KC770021.1 Pyrus pyrifolia microsatellite TXY53 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008350867.20.0transcription factor TGA2.3-like
SwissprotQ9SX270.0PAN_ARATH; Transcription factor PERIANTHIA
TrEMBLA0A498IDS90.0A0A498IDS9_MALDO; Uncharacterized protein
STRINGXP_008350867.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60223149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.11e-154bZIP family protein
Publications ? help Back to Top
  1. Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU
    The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control.
    Front Plant Sci, 2011. 2: p. 79
    [PMID:22645551]
  2. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  3. Wynn AN,Seaman AA,Jones AL,Franks RG
    Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development.
    Front Plant Sci, 2014. 5: p. 130
    [PMID:24778638]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. de Luis Balaguer MA, et al.
    Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640
    [PMID:28827319]