PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000301871 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | bHLH | ||||||||
Protein Properties | Length: 589aa MW: 66407.9 Da PI: 9.0326 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.2 | 4.4e-06 | 379 | 428 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r + erEr+ R+ N+ f+eL + l + ++ Ka+iL +A++ +k+L MDP0000301871 379 KRIHKAERERKKREXFNEHFFELADALELN----QQNSGKASILSEATRLLKDL 428 688899**********************98....56677899******999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.73E-6 | 376 | 428 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.6E-8 | 377 | 447 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.96 | 378 | 428 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.66E-11 | 379 | 457 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.6E-4 | 384 | 434 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 589 aa Download sequence Send to blast |
MHRSKTVVFI WFLYALLFYS LFQMALRNSD SSRNSTSASD SVISNKERRS ALYDQMGRDL 60 AEHGPVFLKN GGQTSQSLSL SDIFTIRDGS VAPVLKAANP PVRAXVLYLS TQYSIPILNX 120 LKPILDPYFD EAIWFQNSSL YHSSMFHASH HISPVPATXD EIEAEAAAVR NIAEGLCPLK 180 IVLDRVVLTS TGVLLGCWQV XSGSDPITIR EKLRTALPRA PEKQLVLSNT SEQVHFFQEL 240 VNRLNKELQG FEDFSQSQLS SRQLVTIDQR YKALSSSSRR SWVPXILCRX LARVXLQRRH 300 QCVESFGIYV KGRMHMVGRL ALSRSVHLGS IVNKYLTPMD KADXFRIDDC TNRCYYYPMP 360 KSICVKACXG IKKQGKIPKR IHKAERERKK REXFNEHFFE LADALELNQQ NSGKASILSE 420 ATRLLKDLFG QIKCLQKENA SLLSESNYMT LEKNELRDDN SALETQIEKL QSEIQERVAQ 480 SKPDLNAPPC TELRPEVASH FTGNCIGFPT QEPGLQQPPA VFVMPVGPDL QAYPQPXVAH 540 LTSNTTSHVS KPXARYPTSV DSWPSQLLGE KPTAGKGFRQ SRENDHSIM |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.7162 | 0.0 | bud| cell culture| fruit| leaf| root| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | W9QXK2 | 1e-169 | W9QXK2_9ROSA; Uncharacterized protein | ||||
STRING | XP_010092057.1 | 1e-170 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9738 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 7e-52 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000301871 |