PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000300795
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family FAR1
Protein Properties Length: 1621aa    MW: 183973 Da    PI: 7.3394
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000300795genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR122.63.4e-07504584888
           FAR1   8 kevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 
                    k+ GF +++ +s    +++   + t+ C + g+ +e+k+++ k+rr + ++++gC  +lk +k+   + w+++ +   HnH+
  MDP0000300795 504 KRNGFVIVTLRSDMDCKST-KPRVTLGCERGGRFKEKKTRAAKKRRGTGTKKCGCPFTLKGEKSAnGDGWMLKVVCGVHNHA 584
                    6789999999988884444.7899************99999*********************9998899************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.170.270.104.3E-67188430No hitNo description
SuperFamilySSF821997.33E-66214425No hitNo description
SMARTSM005706.6E-22235287IPR006560AWS domain
PROSITE profilePS5121516.082235286IPR006560AWS domain
PROSITE profilePS5028019.086283405IPR001214SET domain
SMARTSM003177.9E-42288411IPR001214SET domain
PfamPF008561.1E-18299405IPR001214SET domain
PROSITE profilePS508689.691412428IPR003616Post-SET domain
SMARTSM005080.0033412428IPR003616Post-SET domain
PfamPF031016.9E-5504584IPR004330FAR1 DNA binding domain
PfamPF105514.6E-27700794IPR018289MULE transposase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0010224Biological Processresponse to UV-B
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0016571Biological Processhistone methylation
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0018024Molecular Functionhistone-lysine N-methyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1621 aa     Download sequence    Send to blast
MPIVLISSIW VWVKVVGGYA DLIMDMSEKL YKYVRSVETP QPKRSSCKGK TGYSTTVIQA  60
KKNENDAVVG GRGKVMLHLG SRAWTSTSWS AWGSMACCGQ KGCSGCPSWA ARIHLLDGPA  120
RLGVLLVEMC GGGGSMVKSH EKVLRKKQKI RPRKKPNGGF WLRDTEEEEE EEEFHFQKAM  180
ESEADHTHTE IDQIEEHCAR QLLCLTEQCT GQGPRYTHIE KNEFLHRRHK IQTEEDIAIC  240
ECKYDENDPE SACGERCLNV LTNTECTPAH CPCGVYCKNQ RFQKLEYAKT KLFKTEGRGW  300
GLLANENIKA GQFIIEYSGE VISWKEAKQR SHAYETQGLR DAFIISLNAS ESIDATEKGS  360
VARFINHSCQ PNCETRKWNV LGEIRVGIFA KQDILVGTEL AYDYNFEWYG GAKVRCLCGA  420
SSCSGFLGAK SRGFQGETSS RGSGVGSECA TGYTSEFRSN EDNNSARDSG VISDCVMDFT  480
SEFTTYAIFK TRESLMQWAR RTGKRNGFVI VTLRSDMDCK STKPRVTLGC ERGGRFKEKK  540
TRAAKKRRGT GTKKCGCPFT LKGEKSANGD GWMLKVVCGV HNHASTEYPD GRSYAGRLSE  600
QEASLLIDLS KNLVRPKEIL STLKQRDELN ATTIRTIYNA RQRQRVKEKA GRSQMQQLLC  660
KLNEHDYVEW HRRCPMSDSV QDLFWAHPVS LELLRAFPTI LMIDCTYKTN RYYYPLLEVV  720
GVASTDITFS IAFVFLNSEK EDNYIWALSK LRGVMVECPM PNVIVTDMDL QLMRAIEVVF  780
PTAKNLLCKW HINKHVLAKC KNLFESKERC DRFIMKWNVL VTSPTENDYI RELAVLQREF  840
SMYTEVMEYV TNTWLNPFKD RFVSAWTDMI MHFGNVTSNR AKGAHTKLKR ELGMSLGNFE  900
GSFESIHSLI ELQHTDIKIS FDKCLMVTQQ SFKSSEFKYL RGVVSMFALE KVLSQSKLAT  960
SIGVDGSGCG CVIPRTHGLP CAHQIVKYKR ECQPIPLESL DPHWTKLDIL PPSSAQDSMD  1020
VNEFPELELL QQYFLEANAE NRLMLRKRVR ELVAPYTTNL VEPGVKSRLR GQLREKIDMS  1080
TQQDPYAFDL RSASVDSHSP SPMDGQQNFT HKQMEQTKKK VYRTLSMKGI SYIDAFPIGL  1140
RPFIQQVKDV CQDGHCGFRA VADLVGMGEN GYLQVRNDLL TELSSFSAHY GELYGSTDRV  1200
RELAQILSFF DEGRAPFDRW MMMPDMGHLI ASCYKVVLFH LSSTQCLTFL PLRSAPVPLP  1260
RRRQIAIGFM NDCHCVEVFL RPGHPVPPIT SDWIRYHTPA AQGWDTVYTS CILRFKSLED  1320
TYLWEDDDDR YSVEKIPLYD SAEDEPSSRL FRAVNSSSSE FDVDGMMENV NVDSEHQLMS  1380
TALVVQSLDS VPMEGVVMEV KTEVNMERKL YSEDNQLAIS EKNAIISRIR SNTAGRNYHI  1440
GSGSLSNKRS KQYNGRLKHG AQKQVDAKSV AALLASKEAQ EEILNYERMK NDAATHLESL  1500
YNEIRPAIEE HERDSQDSVA TSVAEKWIEA CCLKLKAEFD LYSSIVKGIA CTPRRPFAEA  1560
EPSDGNTENE IKFDIVWGFD YLAGTSFPFP HHFRSTGPCD YENKRREMDR EYPLENVDSI  1620
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5jjy_A6e-5320743229262Histone-lysine N-methyltransferase SETD2
5jlb_A6e-5320743229262Histone-lysine N-methyltransferase SETD2
5jle_A6e-5320743229262Histone-lysine N-methyltransferase SETD2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144150RKKQKIR
2499505RRTGKRN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.231180.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008372732.10.0uncharacterized protein LOC103436100 isoform X1
RefseqXP_008372734.10.0uncharacterized protein LOC103436100 isoform X1
TrEMBLA0A2P6SB460.0A0A2P6SB46_ROSCH; Histone-lysine N-methyltransferase
STRINGXP_008372732.10.0(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-14FAR1-related sequence 5