PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000299846

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bHLH

Protein Properties

Length: 284aa MW: 30478.8 Da PI: 5.4599

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000299846	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.6	1.4e-10	165	212	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq MDP0000299846 165 SHSLAERARREKISERMKVLQDLVPGC----NKVIGKALVLDEIINYIQSLQ 212 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.76E-18	159	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.30E-9	159	216	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.5E-19	161	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.878	161	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.6E-8	165	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-10	167	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MDPPLINESS SSVANPASYS LAEIWPFSGE PGGSGGGLGL GVVNLGQSLG GLGDSSVNRD 60 GSLEESTVTE QSGGGGGGGR KRRDVNYEDE SSKRVSTRSG NGLKDLGKRM KLAVSRNEND 120 NLKAEVEESS AGGDSKPAEE STKPSEPPKQ DYIHVRARRG QATDSHSLAE RARREKISER 180 MKVLQDLVPG CNKVIGKALV LDEIINYIQS LQHQVEFLSM KLEAVNSRVN MNPTIEAFPP 240 KDLGAQPFDA AALLFSSHTP REYAQSSQPE WLHMQVGGSF DRAT

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.12791	0.0	fruit\| root\| stem

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008393087.1	0.0	transcription factor bHLH79
Swissprot	Q9LV17	3e-87	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A498I3Q3	0.0	A0A498I3Q3_MALDO; Uncharacterized protein
STRING	XP_008393087.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1171	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	2e-78	bHLH family protein

Link Out ? help Back to Top
Phytozome	MDP0000299846

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]