PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000296791
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 256aa    MW: 29027.7 Da    PI: 7.1998
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000296791genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.78.1e-101051344
                   --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
         SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                   +en++ r+  f kR++ +l K  E+ +LC++++  i++++++
  MDP0000296791 10 VENDRARKECFRKRKANLLRKMDEITTLCQVNAFAIVYGQEN 51
                   69*************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.2E-8159IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.348151IPR002100Transcription factor, MADS-box
CDDcd002663.19E-15184No hitNo description
SuperFamilySSF554559.03E-17391IPR002100Transcription factor, MADS-box
PfamPF003195.0E-111052IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGKKVKLQWV ENDRARKECF RKRKANLLRK MDEITTLCQV NAFAIVYGQE NNDPTLWPSH  60
PEVEELIKGF FSIPNVERYK KSLNQETYLL EXAVRFRERI KKINKQIREM KVNKLVHQVH  120
EGKSLNEFER SDMTDLVSFC EEKMYGIKKL VAHLEKEDPN REQGTSNYEK GKEIENAAGN  180
IAANGIENSG DALGLGLMSH SGAGKEVGQP DVSHEMVKQS ENITGKKGKR IRLMGVAIEG  240
SVADDDDAED PPQHGN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008360624.20.0agamous-like MADS-box protein AGL36
TrEMBLA0A498I2E60.0A0A498I2E6_MALDO; Uncharacterized protein
STRINGXP_008360624.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110141938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.14e-26AGAMOUS-like 48