PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000296508

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bHLH

Protein Properties

Length: 455aa MW: 49949.1 Da PI: 6.3555

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000296508	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.7	6.5e-06	345	383	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L MDP0000296508 345 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 383 5778999********998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.652	334	383	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.28E-7	344	387	No hit	No description
SuperFamily	SSF47459	5.5E-12	344	400	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-9	344	393	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0036	345	389	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MADEFQTPGN WWDSSSRTRF ETGASPSSSS LNTLGSFGWQ SDIVDIKARS SMDSGSVSGT 60 SSMVFHDTHK LQEGTDSAGG GSDPNLHMMG LGLSSQATDW NQALFRGEKE TSFRSILQEN 120 MNSNTANFQQ ESDQQLQWRD KLFAGGCGDS SNNEFKQMTR GFSLDQTQFS PRYSSGESTV 180 TCQGLPSSFQ MDSASVALYG SPSTILQGLL GPHHDNQPQQ PSSATINFPY QGNYGINNSS 240 ELLPSWSKVP QFLRTSPPKQ PPQSHLQFSN DAPFWNAPHE AAMKDVRPSF FPSLQPQFPT 300 ARFDEKPKNI SEVQESGAVG KKSGSEAASK RPRNEASSPL PAFKVRKEKM GDRITALQQL 360 VSPFGKTDTA SVLSEAIEYI KFLHEQVNVL STPYMKSGAV IQHQQQNSDK VKDPDGPKQD 420 LRSRGLCLVP VSSTFPVTHE TTVDFWTPTF GGTFR

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MADEFQTPGN WWDSSSRTRF ETGASPSSSS LNTLGSFGWQ SDIVDIKARS SMDSGSVSGT  60
SSMVFHDTHK LQEGTDSAGG GSDPNLHMMG LGLSSQATDW NQALFRGEKE TSFRSILQEN  120
MNSNTANFQQ ESDQQLQWRD KLFAGGCGDS SNNEFKQMTR GFSLDQTQFS PRYSSGESTV  180
TCQGLPSSFQ MDSASVALYG SPSTILQGLL GPHHDNQPQQ PSSATINFPY QGNYGINNSS  240
ELLPSWSKVP QFLRTSPPKQ PPQSHLQFSN DAPFWNAPHE AAMKDVRPSF FPSLQPQFPT  300
ARFDEKPKNI SEVQESGAVG KKSGSEAASK RPRNEASSPL PAFKVRKEKM GDRITALQQL  360
VSPFGKTDTA SVLSEAIEYI KFLHEQVNVL STPYMKSGAV IQHQQQNSDK VKDPDGPKQD  420
LRSRGLCLVP VSSTFPVTHE TTVDFWTPTF GGTFR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008386041.1	0.0	transcription factor bHLH123-like isoform X1
Swissprot	Q8GXT3	2e-90	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A498ILG9	0.0	A0A498ILG9_MALDO; Uncharacterized protein
STRING	XP_008386041.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1118	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	2e-84	bHLH family protein

Link Out ? help Back to Top
Phytozome	MDP0000296508

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]