PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000296123

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

M-type_MADS

Protein Properties

Length: 341aa MW: 38642.9 Da PI: 8.033

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000296123	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	54.3	1.7e-17	13	53	3	43
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n+ r+vtf kRrng+lKKA EL +LCd++v+ i++ ++ MDP0000296123 13 IPNEXSRKVTFRKRRNGLLKKAVELHTLCDVKVCTIVYEKK 53 78999********************************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.7E-16	1	64	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	18.516	3	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.7E-12	5	25	IPR002100	Transcription factor, MADS-box
CDD	cd00266	2.00E-18	5	87	No hit	No description
SuperFamily	SSF55455	1.09E-18	5	83	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.4E-17	13	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.7E-12	25	40	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.7E-12	40	61	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MGRSKSKLPL ELIPNEXSRK VTFRKRRNGL LKKAVELHTL CDVKVCTIVY EKKSKGKVSR 60 AATFPAEFKD VKEIIDMYKS NSSKVKKVQS LGDFYATRTV QVKEEFGKLR SKSCEEKYPA 120 WEDRLDAFSV EQMLDLLKNL ENKIVDTHKM HGMMKESKQI VVQETIPPKE EIVVNIQILL 180 KATFKSNREY SQMQSAGTSW ANNNNIQYIC SSATISNSNI RTSTWDIPAP YGNMDGNATF 240 CNPMQQQPCM YDSIFSSAAS QQQEAAVVPS VENPNPIGIV PLSVSYDQPM LSLTMQPSYL 300 ECPISASAFG LSSEYDQQFG AFQSQHMFYD NVFFDNMAHF E

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028963385.1	0.0	agamous-like MADS-box protein AGL11
TrEMBL	A0A498J3M0	0.0	A0A498J3M0_MALDO; Uncharacterized protein
STRING	XP_008365470.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF534	31	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	4e-14	M-type_MADS family protein

Link Out ? help Back to Top
Phytozome	MDP0000296123