PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000295749

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

FAR1

Protein Properties

Length: 931aa MW: 107095 Da PI: 7.6377

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000295749	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.3	1.4e-19	161	235	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY YA ++GF+vr+ + ++s+++g++ +r+fvCskeg++ + +rtgC a ++v+++++gkw+v+ + ++HnH l MDP0000295749 161 DFYTLYAARMGFKVRTGQLYRSRTDGSVSSRRFVCSKEGFQIS--------------SRTGCPALIRVQRRDSGKWVVDLFLKDHNHGL 235 6*************************************765..............699*************************98 PP
2	FAR1	67	5e-21	316	391	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA+++GF++r+ + +sk +g+it+r+fvCskeg++++ +r+gC a +++k++++g+w+v++++++HnHe+ MDP0000295749 316 QFYHAYAENTGFRIRIGQLFRSKLDGSITSRRFVCSKEGFQHP--------------SRVGCGAYMRIKRQDSGRWVVDRFDKNHNHEFE 391 6*************************************999..............4899************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.3E-15	161	235	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.8E-16	316	390	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.0E-26	491	583	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.274	753	801	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.4E-7	776	803	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	2.5E-7	778	798	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 931 aa Download sequence Send to blast
MSGSPNGLQM TIKLGQTLKL GANERQSREI QNPXHFPFII SQIRQIXERA PSDFFPQSIF 60 PPKYAHEILK WRFELRNHRS PLVVLLISEM GMESSSTHFT NIRSLDTGSK IEDSGNNLVI 120 EAYPLGMMPP MNAVDTEDEG ESGVLEPYVG LEFDSADVAR DFYTLYAARM GFKVRTGQLY 180 RSRTDGSVSS RRFVCSKEGF QISSRTGCPA LIRVQRRDSG KWVVDLFLKD HNHGLGSXTE 240 ENRSPIFQKK SSMPTNSVVE VSHRPKVKLI KAIEDKPPCP SGVITAKRLK RGGDEMQSEV 300 DLSAGLEFNS ANEAYQFYHA YAENTGFRIR IGQLFRSKLD GSITSRRFVC SKEGFQHPSR 360 VGCGAYMRIK RQDSGRWVVD RFDKNHNHEF ESHLEVQKKN LFSSKKFIEE EIGGLEIEDI 420 VDINNGNLVK RHRENHIGSD WYSVLFDFFQ TKQAEDTGFF YAVEVDNGNC MSIFWADGRS 480 RFSCSQFGDA IIFDTSYRKS IYLVPFAAFI GINHHKQPVL LGCALVADES EKSFTWLFQT 540 WLRAMSGCRP LSIIADQDDV IQQAIMQVFP GTHHRFSLWQ IKAKESEHLS VMNGSFKYEY 600 EKCIYQCQTA DEFETAWNAL LSRYGLKDNA WLKAMYEKRR SWVPLYLRAT FFAGIPFNES 660 IESFFGAHFN AQTPLKEFVS QYERGLEGRR EEEIKEDFNS FNLKAYLQTK EPLEEQCRRL 720 YTLNTFRVFQ KELLQSYSYL GFKIYDEGAI IRYLVRKGGN DDEKSIVTVG AAIPEVGCSC 780 RMFEFEGILC RHVLRVFQIL DIKEVPPCYI LRRWTRNAEY GIPCESELGG NPQELKALMV 840 WSLREAACKY IEAGATSLEK HKLAYEIMRE GGRRLCWQRS LILILLVSHS MCQHNTEDFT 900 DISAINLPSF ENEIRTXTNI RRRNIIXIYG F

Sequence ? help Back to Top

Protein Sequence Length: 931 aa Download sequence Send to blast

MSGSPNGLQM TIKLGQTLKL GANERQSREI QNPXHFPFII SQIRQIXERA PSDFFPQSIF  60
PPKYAHEILK WRFELRNHRS PLVVLLISEM GMESSSTHFT NIRSLDTGSK IEDSGNNLVI  120
EAYPLGMMPP MNAVDTEDEG ESGVLEPYVG LEFDSADVAR DFYTLYAARM GFKVRTGQLY  180
RSRTDGSVSS RRFVCSKEGF QISSRTGCPA LIRVQRRDSG KWVVDLFLKD HNHGLGSXTE  240
ENRSPIFQKK SSMPTNSVVE VSHRPKVKLI KAIEDKPPCP SGVITAKRLK RGGDEMQSEV  300
DLSAGLEFNS ANEAYQFYHA YAENTGFRIR IGQLFRSKLD GSITSRRFVC SKEGFQHPSR  360
VGCGAYMRIK RQDSGRWVVD RFDKNHNHEF ESHLEVQKKN LFSSKKFIEE EIGGLEIEDI  420
VDINNGNLVK RHRENHIGSD WYSVLFDFFQ TKQAEDTGFF YAVEVDNGNC MSIFWADGRS  480
RFSCSQFGDA IIFDTSYRKS IYLVPFAAFI GINHHKQPVL LGCALVADES EKSFTWLFQT  540
WLRAMSGCRP LSIIADQDDV IQQAIMQVFP GTHHRFSLWQ IKAKESEHLS VMNGSFKYEY  600
EKCIYQCQTA DEFETAWNAL LSRYGLKDNA WLKAMYEKRR SWVPLYLRAT FFAGIPFNES  660
IESFFGAHFN AQTPLKEFVS QYERGLEGRR EEEIKEDFNS FNLKAYLQTK EPLEEQCRRL  720
YTLNTFRVFQ KELLQSYSYL GFKIYDEGAI IRYLVRKGGN DDEKSIVTVG AAIPEVGCSC  780
RMFEFEGILC RHVLRVFQIL DIKEVPPCYI LRRWTRNAEY GIPCESELGG NPQELKALMV  840
WSLREAACKY IEAGATSLEK HKLAYEIMRE GGRRLCWQRS LILILLVSHS MCQHNTEDFT  900
DISAINLPSF ENEIRTXTNI RRRNIIXIYG F

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008353242.2	0.0	protein FAR1-RELATED SEQUENCE 7-like
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A251QXS7	0.0	A0A251QXS7_PRUPE; Uncharacterized protein
STRING	XP_008353242.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Link Out ? help Back to Top
Phytozome	MDP0000295749

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]