PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000295593
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 963aa    MW: 105530 Da    PI: 6.7877
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000295593genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.5e-09180224554
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    h+++Er RR+ri +++  L+el+P++      K + a++L + v+Y+k L
  MDP0000295593 180 HSIAERLRRERIAERMKALQELVPSC-----NKTDRAAMLDEIVDYVKFL 224
                    99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.29E-10173229No hitNo description
SuperFamilySSF474595.5E-15173234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.526175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-15177234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-7180224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-12181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS513755.02410442IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.481475505IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.102.1E-8487683IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137512.408506540IPR002885Pentatricopeptide repeat
PfamPF130411.1E-8506545IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007567.8E-8510542IPR002885Pentatricopeptide repeat
SuperFamilySSF819012.28E-5513671No hitNo description
PROSITE profilePS513755.886578608IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.668609639IPR002885Pentatricopeptide repeat
PfamPF015351.5E-4611639IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.2E-4611641IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.595640674IPR002885Pentatricopeptide repeat
PfamPF130415.8E-11640684IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.9E-8642675IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.777675709IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.999710744IPR002885Pentatricopeptide repeat
PfamPF015350.0056715741IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0015716742IPR002885Pentatricopeptide repeat
PfamPF015350.0012744769IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.177775810IPR002885Pentatricopeptide repeat
PfamPF015350.07777804IPR002885Pentatricopeptide repeat
PfamPF128542.0E-6807838IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.407811841IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.102.1E-8841876IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.382843873IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.831877911IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 963 aa     Download sequence    Send to blast
MAGNPQEGLG DDFFEQILAV PPSYSAGGGG ESAGGGYGGD VGSMPMVLQL GSAGSSGGGX  60
GYRGGGVGMG LGIPLGLNLE QGGFLXQDNR FRDEANNNNN TNSSNVSASI NGRDSVHMSS  120
LFPAFGHLQN HSSLRPTPPP PQPPHQFHSQ PPPGLSNAVH HPPSIRPRVR ARRGQATDPH  180
SIAERLRRER IAERMKALQE LVPSCNKTDR AAMLDEIVDY VKFLRLQVKV LSMSRLGGAG  240
AVAQLVADVP LSAVEGEGME GGTNQQACEK WSNDGTEQEV AKLMEEDVGA AMQFLQLEVC  300
HRLIAKFESL SRYDKQCGRG IRCLSSSSSM GRRIHWDPTV ALELNHPALV LLEKCSTRHH  360
FKQILGQMMR TSLIGQTFPM SRLLTFSAIS HPENLDMAVL LFDHFTPYPN LYIYNSMISA  420
LSFSKXQAFX LYSSMLKAGI YPDKHTLLYL LQASECVVEA KQIHSHAVVT GLXSHRYLQN  480
TLMKIYLEKG EMGLAQQLFD DVPTXDTVPF NIMIVGYAKM GYFSEALQLF YEMVGLGLEP  540
DEFTILGLLI SCGLLGDARL GMSVHAWIER XKAITSGNLI LGNALLDMYV KWNKLEVAQS  600
XFDALAEKDI VSWNTMXAGY AKVGKIELAX NYFEQMPXRD LVSWNSLIAG YAKKGDYTMA  660
VKVFNEMITE NAKPDSITLV NLVSAAAETG ALDHGRSMHG LIVRMQLKID VFLGSALIDM  720
YCKAGSIERA FMVFRGLTEK DVTVWTTMIS GFAFHGYGCK ALDLFSEMQG GLSPNGVTLL  780
AVLTACSHSG LVDEGLNLFN NMDKKFGIEP GVEHYGCLVD LLCRSGRLAE AKEVIKKMPV  840
RPSRNIWGAM LSACRAQGDM ELAETASAEL LKLEPGREGG YIMMSNIYAA CGKWSYSDKI  900
REVMEIRGVK KAAGCSSVNV DGVVHNFVAA DKRHPRWEEI FLVLQCMKSE MKLAAGFRFD  960
PFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D1e-5836290415338PLS9-PPR
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184189RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.65210.0cell culture| fruit| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6272180.0AB627218.1 Malus x domestica mRNA, microsatellite: MEST049, clone: FLW01_46_C11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028957390.10.0pentatricopeptide repeat-containing protein At3g04750, mitochondrial
RefseqXP_028957391.10.0pentatricopeptide repeat-containing protein At3g04750, mitochondrial
SwissprotQ9SR010.0PP212_ARATH; Pentatricopeptide repeat-containing protein At3g04750, mitochondrial
TrEMBLA0A498K8N40.0A0A498K8N4_MALDO; Uncharacterized protein
STRINGXP_008370702.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1441722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.34e-49bHLH family protein
Publications ? help Back to Top
  1. Lurin C, et al.
    Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.
    Plant Cell, 2004. 16(8): p. 2089-103
    [PMID:15269332]
  2. Liu JM, et al.
    The E-Subgroup Pentatricopeptide Repeat Protein Family in Arabidopsis thaliana and Confirmation of the Responsiveness PPR96 to Abiotic Stresses.
    Front Plant Sci, 2016. 7: p. 1825
    [PMID:27994613]