PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000293310 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | bHLH | ||||||||
Protein Properties | Length: 435aa MW: 49086.6 Da PI: 10.7118 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.3 | 4.2e-11 | 249 | 289 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++RRd iN+++ L++l+P+a K +Ka++L ++++Y+++Lq MDP0000293310 249 QKRRDLINQKIKALQRLVPNA-----SKTDKASMLDEVIKYLQQLQ 289 79******************9.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03763 | 6.0E-21 | 44 | 131 | IPR005516 | Remorin, C-terminal |
PROSITE profile | PS50888 | 13.3 | 239 | 288 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-10 | 246 | 294 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-13 | 249 | 304 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-8 | 249 | 289 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.56E-9 | 249 | 293 | No hit | No description |
SuperFamily | SSF47459 | 1.22E-13 | 249 | 312 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 435 aa Download sequence Send to blast |
MKDQRAQESA FPSRYPNRAS SSRPSTPANG XQNQKGSPGR RNAADAKADA WERAQMKKIQ 60 RRYEKVKATI DAWENEKKMK AKAKMERRKX EIEQRRARNM QHYQIKQARI DQIAGGARAQ 120 VEEKRRNEES KDLIGSCPGG FPHWKCSKVK KPRPRHLAYE GRRTTSNYDV TELKLENGQL 180 AMHGLGALLT AQSNPTWSRS RACDTLESIV DQATCHKRDP NIIRHDQTPA NTSSVVASSG 240 ETWTDSSVQK RRDLINQKIK ALQRLVPNAS KTDKASMLDE VIKYLQQLQA QVQMMHNLRN 300 FMANGHMNMN MMVPLEMQQL QLQHLHQMSL LAHMGIGMGS RIHPTPVVAA ALPSFMPPFM 360 MPLLIPPHPP PQAKAEPTST NNGSDPLPDP YCALLAQQSM SMDLFNRMAA LYRQEVTPAT 420 AASSSQPRSN HVRRN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017192951.2 | 1e-110 | transcription factor PIF7-like isoform X1 | ||||
TrEMBL | A0A498I2S6 | 1e-133 | A0A498I2S6_MALDO; Uncharacterized protein | ||||
STRING | XP_008367556.1 | 1e-98 | (Malus domestica) | ||||
STRING | XP_008393195.1 | 4e-98 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12999 | 24 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 7e-18 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000293310 |