PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000292968
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 272aa    MW: 30863.4 Da    PI: 9.6559
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000292968genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.74.2e-13149239183
                    EEEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT.-EEEEE CS
             B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg.DfvvFk 83 
                    f+k+lt+sdv    +rl++ kk +e+h       ++++++++ +t +d  g+++ + ++ + ++ ++vlt+GWk+F+++ gL e+ Dfv+  
  MDP0000292968 149 FEKQLTSSDVRDDqSRLSMCKKDVENHifpllkdDEDPNRGIPVTTYDMGGNKYPMVFKTWVSK-THVLTGGWKSFCHDRGLVEKiDFVTVW 239
                    99********98779*******************888999******************999997.789**************8543888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.9E-16149244IPR015300DNA-binding pseudobarrel domain
PfamPF023628.3E-10149253IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.6E-16149243IPR015300DNA-binding pseudobarrel domain
CDDcd100177.00E-17149253No hitNo description
SMARTSM010190.0017149257IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MILGERYTSV MVDQYCEDPS HEDKEMATTT EGANLLLYLK RKLLSAETAR KLEYMKYKVL  60
SQNGLYSYAR TKRKAPRIEV DEAPLPQGAI SGPSAPQEAI EGASPRGRRL PGEPQLQVIQ  120
GLFYGKYAPP DLPPVPSLRS LIQVHSKPFE KQLTSSDVRD DQSRLSMCKK DVENHIFPLL  180
KDDEDPNRGI PVTTYDMGGN KYPMVFKTWV SKTHVLTGGW KSFCHDRGLV EKIDFVTVWV  240
FRNVVNGSLC FAINSRRFPA VSEAIKKRRR QN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028954085.11e-163putative B3 domain-containing protein At4g03170
TrEMBLA0A498KK480.0A0A498KK48_MALDO; Uncharacterized protein
STRINGXP_008383614.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41481936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.18e-30B3 family protein