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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000292449 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | CPP | ||||||||
Protein Properties | Length: 811aa MW: 88990 Da PI: 5.4195 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 49.7 | 7.5e-16 | 518 | 556 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C++C+Nk MDP0000292449 518 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQECFNKP 556 689**********************************96 PP | |||||||
2 | TCR | 50.8 | 3.3e-16 | 603 | 642 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN+ MDP0000292449 603 RHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNTF 642 589***********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 2.6E-17 | 517 | 558 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.903 | 518 | 643 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.6E-11 | 520 | 555 | IPR005172 | CRC domain |
SMART | SM01114 | 1.3E-17 | 603 | 644 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.0E-11 | 605 | 641 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 811 aa Download sequence Send to blast |
MDTPERNQIG TPKAKFEDSP VFNYINSLSP IKPVKSVHIT QTFSSLXFAS LPSVFTSPHV 60 SSHKXSRFLR GHNPSDPSKS ESSLESGNKV STNEDAAELC XNSAELHEDC VPGDSIGEAS 120 VEPRNEHSKF VIELPRNLKY DCGSPECGAT TRCGTEAGCE SEVADLSAPL VPYVQKTSEN 180 GSSDDGAHLQ NICQSEQRNE LTGCDWESLI SGASDLLIFD SPNGSEAFRG IMQNPLDSVT 240 RFCNSLMPRL SQNETADEQN VLVLDTIVSG EQPETEDPSS QYGEASQPED TELMQDHLNS 300 CMVSSQIEKE DNNLEAPMQF NCKPGLNLHR GLRRRCLDFE MVGARRKSLD NVPNSSSSML 360 SQSDEKXTTN DKQLVPMKPG GESSRCILPG IGLHLNALAT TSKDYKTIKR ENMAYGRQLS 420 LPNLTAPANS PTAGQGPGHE SFSSASSERD MDGTENGVQL LQDASQEPAF LANEEFNQNS 480 PKKKRHVLLT RYSSXNYYVI FIFIFVPKFE QAGETESSCK RCNCKKSKCL KLYCECFAAG 540 VYCIEPCSCQ ECFNKPIHED TVLATRKQIE SRNPLAFAPK VIRNADPVPE YGEESSKTPA 600 SARHKRGCNC KKSSCLKKYC ECYQGGVGCS ISCRCEGCKN TFGRKDGSFM LTETEADEEE 660 AEACGKSVAE NHQQKNEIQE NEEQHQDSAL PTTPLRLSRQ LVSLPFSSKN KPPRSSVFSI 720 GSSSGLYTSQ KLGILCPETK FERHIQAVPE DEMPEILQGD GSPSTGIKTA SPNGKRVCPP 780 NREFAPSPGR RAGRKLILQS IPSFPSLTPQ N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 5e-17 | 522 | 640 | 14 | 120 | Protein lin-54 homolog |
5fd3_B | 5e-17 | 522 | 640 | 14 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00624 | PBM | Transfer from PK22848.1 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008390995.2 | 0.0 | protein tesmin/TSO1-like CXC 2 isoform X1 | ||||
TrEMBL | A0A498HL32 | 0.0 | A0A498HL32_MALDO; Uncharacterized protein | ||||
STRING | XP_008390995.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2619 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 1e-152 | TESMIN/TSO1-like CXC 2 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000292449 |