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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | MDP0000291883 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 750aa MW: 85701.9 Da PI: 6.1331 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 77.8 | 2.1e-24 | 537 | 626 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89
+fY++YA++vGF +r+ + + s+ +++i +r + C+k+g r+ + ++ ++ rr++++t gCka++ vk++k+gkw++t+++++H+H+l
MDP0000291883 537 EFYEDYARRVGFIMRIGQCRXSHVEKRILSRXLSCNKQGGRSLKARDqVRSVRRPQPTTGEGCKAMMLVKLKKSGKWVITRVVKDHTHPL 626
6****************************************99998845567889*********************************99 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50222 | 15.155 | 1 | 36 | IPR002048 | EF-hand domain |
| SuperFamily | SSF47473 | 4.88E-41 | 3 | 141 | IPR011992 | EF-hand domain pair |
| Gene3D | G3DSA:1.10.238.10 | 3.7E-27 | 3 | 88 | IPR011992 | EF-hand domain pair |
| Pfam | PF13499 | 3.6E-11 | 4 | 67 | IPR002048 | EF-hand domain |
| CDD | cd00051 | 1.79E-15 | 5 | 62 | No hit | No description |
| SMART | SM00054 | 7.8E-5 | 5 | 33 | IPR002048 | EF-hand domain |
| PROSITE pattern | PS00018 | 0 | 14 | 26 | IPR018247 | EF-Hand 1, calcium-binding site |
| PROSITE profile | PS50222 | 13.119 | 37 | 72 | IPR002048 | EF-hand domain |
| SMART | SM00054 | 2.9E-4 | 41 | 69 | IPR002048 | EF-hand domain |
| PROSITE pattern | PS00018 | 0 | 50 | 62 | IPR018247 | EF-Hand 1, calcium-binding site |
| PROSITE profile | PS50222 | 17.359 | 74 | 109 | IPR002048 | EF-hand domain |
| Pfam | PF13499 | 1.5E-13 | 76 | 142 | IPR002048 | EF-hand domain |
| SMART | SM00054 | 6.7E-7 | 78 | 106 | IPR002048 | EF-hand domain |
| CDD | cd00051 | 3.97E-16 | 82 | 142 | No hit | No description |
| PROSITE pattern | PS00018 | 0 | 87 | 99 | IPR018247 | EF-Hand 1, calcium-binding site |
| Gene3D | G3DSA:1.10.238.10 | 1.2E-21 | 89 | 142 | IPR011992 | EF-hand domain pair |
| PROSITE profile | PS50222 | 14.458 | 112 | 147 | IPR002048 | EF-hand domain |
| SMART | SM00054 | 0.0018 | 116 | 144 | IPR002048 | EF-hand domain |
| PROSITE pattern | PS00018 | 0 | 125 | 137 | IPR018247 | EF-Hand 1, calcium-binding site |
| Gene3D | G3DSA:3.30.110.60 | 1.5E-5 | 250 | 299 | IPR001890 | RNA-binding, CRM domain |
| SuperFamily | SSF75471 | 9.55E-7 | 250 | 300 | IPR001890 | RNA-binding, CRM domain |
| Pfam | PF03101 | 2.1E-23 | 537 | 627 | IPR004330 | FAR1 DNA binding domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003723 | Molecular Function | RNA binding | ||||
| GO:0005509 | Molecular Function | calcium ion binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 750 aa Download sequence Send to blast |
MDKAELRRVF HMFDQNGDGR ITKKEMRDSL EKLGIYIPDK DLIQMIEKID VNGDGFVDMD 60 EFGALYQTIM DERDEEEDMR EAFNVFDQNG DGFITVDELR SVLSSLGLKQ GKTLEDCTIM 120 IKKVDVDGDG RVNFKEFKQM MKGGGSLGDV VCKMFDEKPA AFGDLVGTAW FPPEGRRWVY 180 SAPYVNTEHK AVEPLENSKD GGAGADGAGD GKVKRKKLKG KRAVVRWLKF FRYKKKKDYE 240 RMTAEEKILH KLRKVVVKTF SPEEVKEIAS ELARLTGGIV LGIHEEYTII MYRGKNYYQP 300 PTEIMSPRIT LSRKKALDKS KYKDGLRAET GTESTDNVDS GSSSKLKLEA SNKVKEMMDR 360 SKERSEDDLS TDVDISSDSE DLSDIFCTDS DKETEKKADR PLYLEEFEKF TIESDGEPED 420 FKDHLRQISR DAKKDKSLDE DAGLPNFDEV DRIFLRAASL LRKKKSELET VKFLLXFVSK 480 RRKMERRFDR RPRPWLGLIG NXPKSXGAPE TSVERDLNAV GEPYVGMEFE SEDAAKEFYE 540 DYARRVGFIM RIGQCRXSHV EKRILSRXLS CNKQGGRSLK ARDQVRSVRR PQPTTGEGCK 600 AMMLVKLKKS GKWVITRVVK DHTHPLIVSS GNSMEIWFDK GSESVYGYMI AEVHYLQPLN 660 LIFSQITLQD AKDMKIAELT MDLEREEQLC GQYRELLLAL LNNVEEETXH IATKVRGVVN 720 YVREFETQVE GIPENQMESS SRASSKSNGD |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 2n6a_A | 4e-30 | 4 | 146 | 12 | 152 | human calmodulin/connexin-36 peptide hybrid |
| Search in ModeBase | ||||||
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 231 | 237 | RYKKKKD |
| 2 | 462 | 482 | KKKSELETVKFLLXFVSKRRK |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| TrEMBL | A0A498IX10 | 0.0 | A0A498IX10_MALDO; Uncharacterized protein | ||||
| STRING | XP_008382761.1 | 0.0 | (Malus domestica) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G43280.1 | 3e-44 | FAR1 family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | MDP0000291883 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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