PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000291499
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 602aa    MW: 65717.6 Da    PI: 8.7451
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000291499genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.90.00014314513555
                    TS-STCHHHHHHHHHHHHHHH CS
            HLH  35 skKlsKaeiLekAveYIksLq 55 
                    s++ +Ka++L +A+eY+ksLq
  MDP0000291499 431 SERSDKASMLDEAIEYLKSLQ 451
                    67889***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.15E-7427467IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-6430459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00142431455No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MKKKMKTFSF GELLQNAIIL PSTRALGLAI HHRLGARAFT LPRTAHAGAS RPAIWPYFVP  60
RPPSTSXRWS CSKETKTSTS SSNSLQLFAS ASNEWISEQK MNRRVPDFEM DYEYLLPTTS  120
ALNRPRKSTM PEDDIMELLW QDGQVVMQSQ NQRSSVNSKR SHQSKYDVVL PDDGXGITRP  180
APQPQPQXPA QNPHLFIQED EMASWLQYPL VDEPFSAGLL YPDSTTSEHR TPQVSGPAPA  240
SRPPIHRPRR TELQNFLQSD TTNNNDASSN RPMISETAPS SSKKSVVRET TTVVGSSDTP  300
LVGSCSRALD SRPDGAGGGL ANGATSLTAA TAATAATAAT SFPGNELTTC EMSLTSSPGG  360
SSASAEPDSA PKPPLTADNR KRKGREAAAA DDDAEFQSRD VEFESANGKK QLRGLTSSTK  420
RSRAAEVHNL SERSDKASML DEAIEYLKSL QLQVQMMSMG YGMIPMMFPG VQQMMSVPMG  480
MGIGMGMGMG MEMAGISHPM MPFPNVMAGS PMPTAAALMG PRFPIPPFHM QPIPASDPTG  540
VPAVNKTDQM INSLRAQNPN QSHMPNFADP YQQFFSPQQM QLPLQHVWLL RIRNLNHKLV  600
FT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.49200.0bud| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU2558590.0KU255859.1 Malus domestica phytochrome-interacting factor (PIF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017188044.20.0transcription factor PIF1-like isoform X2
TrEMBLA0A498JXB90.0A0A498JXB9_MALDO; Uncharacterized protein
STRINGXP_008372429.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46073351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.37e-38phytochrome interacting factor 3-like 5