PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000290263
Common NamePIF3
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 708aa    MW: 75818.8 Da    PI: 6.1753
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000290263genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.73.2e-16454500455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  MDP0000290263 454 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 500
                    6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.44E-17446504No hitNo description
Gene3DG3DSA:4.10.280.109.0E-21447508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-21447513IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349450499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13454500IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-18456505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MPLSELYRMA GRVDSNQDFE NDFLELVWEN GQVMMQGQSS RTRKNPSFNN PKNRDRDVGN  60
GNIGKTGKFG SVLDSGLDEI PLSVPSSEMG LSEDDDMLPW LNYSIDEPLH HEXCHDFLPE  120
FSSATANEAS TNHNLASIDK RSSSSQVFRD SNSNSAHEGA CLQQXNVGKV PLNGGADASR  180
PRSGATQLYS LSSQRSQASF PSFRSRVSDT AGDNTSSATH RGVGKNSTQI SSAGGSPXMK  240
ILRPDPVTPS NNNPSIVNFS HFSRPAALVK ANVQTNGVMA GSGSSSMIRI ANKDKFSAAT  300
XNNLPESMPI DSSSSAXKES NSQCQQILVR SSVELKPTEA KPLEEPCTAK QSEGTCQEET  360
SKDDINSNHI PCESAVRVSP NGEKTVEPVV ASSVCSGNSV ERGSDDPTQA LKRKFRETDE  420
SECHSDDVEE EYMGVKKGDH ARGMGSKRSR AAEVHNLSER RRRDRINEKM RALQELIPNC  480
NKVDKASMLD EAIEYLKTLQ LQVQMMSMGA GMYMPPMMLP PGMQHMHGPC MAHFSPMGVG  540
MGMGMGLGMG FGMGMPDMNG ASSSYPMLQV PPMQGAHFPG SHMAGHTAFN GMMGSNLQMF  600
GLPSQGVPVP MQRAPLAPSS AGPFVKSSAG LNAGSSGGPV ENVESAPVSG SKDSVQNMNS  660
QAMQNSNANS SMNQTSSQGQ ATNEGFGQSA LVRNNVQVTD VNNXRANG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1458463ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.161040.0bud| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9878740.0JN987874.1 Malus x domestica phytochrome-interacting factor 3 (PIF3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008388421.20.0transcription factor PIF3-like isoform X1
RefseqXP_028945355.10.0transcription factor PIF3-like isoform X1
TrEMBLA0A498IIU90.0A0A498IIU9_MALDO; Uncharacterized protein
STRINGXP_008388421.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52713353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-62phytochrome interacting factor 3