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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000289768 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB_related | ||||||||
Protein Properties | Length: 166aa MW: 18683.5 Da PI: 8.8116 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.7 | 3.5e-15 | 18 | 90 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT..........................-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..........................tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEde+l+ +++++G +W++Ia+ ++ g t++++k++w+++l MDP0000289768 18 KGPWTHEEDEILISYIQKYGHAnwralpkqagesntxkrdhipakncgSWSAIASSLP-GXTDNEIKNFWHSHL 90 79******************99************************************.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.2E-14 | 9 | 50 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.277 | 13 | 94 | IPR017930 | Myb domain |
SMART | SM00717 | 5.2E-15 | 17 | 92 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.21E-13 | 18 | 91 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.8E-8 | 18 | 49 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.44E-10 | 20 | 90 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-10 | 65 | 91 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MVRAPAPSPC CEKMGMKKGP WTHEEDEILI SYIQKYGHAN WRALPKQAGE SNTXKRDHIP 60 AKNCGSWSAI ASSLPGXTDN EIKNFWHSHL KKRSRTYFRL DDYDQQKHFS SKSTFPVPGL 120 IHEPPSSSNP AVPIPNNDGS KTSIEDIDFW YNLFMKAGEA PKSSTA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028957401.1 | 1e-101 | transcription factor MYB4-like | ||||
Swissprot | Q7XBH4 | 2e-29 | MYB4_ORYSJ; Transcription factor MYB4 | ||||
TrEMBL | A0A498K1K3 | 1e-103 | A0A498K1K3_MALDO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 2e-31 | myb domain protein 15 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000289768 |
Publications ? help Back to Top | |||
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