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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
MDP0000289642 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family |
bHLH |
Protein Properties |
Length: 639aa MW: 70674.5 Da PI: 8.4754 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
MDP0000289642 | genome | GDR | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 39.8 | 8e-13 | 331 | 371 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+rRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq
MDP0000289642 331 QRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 371
7*******************8.....6******************9 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0006783 | Biological Process | heme biosynthetic process |
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway |
GO:0009959 | Biological Process | negative gravitropism |
GO:0010100 | Biological Process | negative regulation of photomorphogenesis |
GO:0010161 | Biological Process | red light signaling pathway |
GO:0010187 | Biological Process | negative regulation of seed germination |
GO:0015995 | Biological Process | chlorophyll biosynthetic process |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0010313 | Molecular Function | phytochrome binding |
GO:0042802 | Molecular Function | identical protein binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 639 aa
Download sequence Send
to blast |
MNGCVPDFEM DDDYSLPTSS ALNRPRKSTM PEDDVMELLW QNGQVVMQNQ NQRSAVNSKR 60 SHQSKYDVVL PDDGXGITRP AXQPQPQAQN PHLFVQEDEM ASWLQYPLVD DPFSADLLYP 120 DSTTSELRQL QVSAPPPASR LPIHTPRRTE VQNFLHFARP NNNNASSNRP MIKEMXPSGS 180 KKSVVRETMT VVDSSDTXLV GPSSRALDSR PDGAGGGLAN GATSFPTTAT AGTSFPAKEV 240 CEMSLTSSPG GSSASASASA EPMSAXKPPP TAXNRKRKGR EVAAADDAEI QSEDVEFESA 300 NGKKQVRGST SSTKRSRAAE VHNLSERISV QRRRDRINEK MKALQELIPR CNKSDKASML 360 DEAIEYLKSL QLQVQMVSMG CGMVPMMFPG VQQMMSMPMG MGIGMGMGMG MEMAGINRPM 420 MPFPNVISGS PMPTAAAHMG PRFPIPPFHM QPIPASDPTR VPAVNQTDHM VNSLGAQNPN 480 QSRMPNFADP YQQFFGPQQM QLPLQQNQAM PQPTTGKPSS SRGPETHENH QSEWACSCYV 540 VTLTRWILRH SLWLKTRRSK IVLEXDISRC ILKDMEGDGD RSFWVSFSAF RKSRRAIAGK 600 DEQKVEDRIL KVLESFREMD KLRISDVPAK IIRHIALTT
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KU255859 | 0.0 | KU255859.1 Malus domestica phytochrome-interacting factor (PIF1) mRNA, complete cds. |