PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000287232 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB | ||||||||
Protein Properties | Length: 256aa MW: 29661.8 Da PI: 5.7331 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.3 | 8.5e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT Ed++l+d+v+++G g+W++ +r+ g++R++k+c++rw++yl MDP0000287232 14 RGAWTDAEDQILLDYVREHGEGRWEKLSREAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52 | 1.6e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T+eE++l+ +++k+lG++ W++Ia +++ gRt++++k++w++ MDP0000287232 67 RGNITQEEEDLIXRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSI 111 7999******************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.653 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.1E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.3E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-23 | 15 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.93E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 20.219 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 6.8E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 67 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-24 | 68 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.53E-10 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MGRSSRCEKD GLRRGAWTDA EDQILLDYVR EHGEGRWEKL SREAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI TQEEEDLIXR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNS ILRKNAQENQ 120 SERSRNKRKT TEDLAAEAAS SVETDSHFSK EEVRPTNNGI EEKNTEAESD CHNGFLRKTS 180 DSDMPRNFIT DLNEGQLSIS EFLHTDFTKL CELNMKIVDC MNSCRNGSLM STPTTEAPLH 240 LEELLNDWEA YDFYLP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-27 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 127 | RSRNKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FR828543 | 1e-85 | FR828543.1 Rosa rugosa mRNA for putative MYB transcription factor (myb10 gene). | |||
GenBank | GU967442 | 1e-85 | GU967442.1 Rosa rugosa putative MYB transcription factor (MYB3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008377865.2 | 0.0 | transcription factor MYB8-like | ||||
TrEMBL | A0A498J9T8 | 0.0 | A0A498J9T8_MALDO; Uncharacterized protein | ||||
STRING | XP_008377865.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 3e-58 | myb domain protein 6 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000287232 |