PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000287231
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Trihelix
Protein Properties Length: 563aa    MW: 64534.1 Da    PI: 5.5691
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000287231genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix88.76.5e-28371454185
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                    rW+++ev aLi +r+++e+++ ++ +k++ Weevs+ m++ g+++s+ +Ck+kwen+nk+++k+k+ +kkr + +s+tc+yf+ql
  MDP0000287231 371 RWPQNEVEALILVRSSVESKFAEQGSKGHVWEEVSALMASMGYQKSARRCKQKWENINKYFRKTKDAAKKR-PLQSKTCSYFSQL 454
                    8*********************************************************************8.9**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.62364428IPR017877Myb-like domain
PfamPF138379.4E-20370456No hitNo description
CDDcd122035.48E-23370435No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MQSNFETAEI GNQQFMDSSS SVLPIFNPQK QNQNHFLQQF HQQQPFSHLS QIAQPIPITH  60
DLFQRQNHLQ FQALLQQQQE EQQEESRLPW QPSPLSFKLG LSENTGPHNL GFKNWQTQEY  120
YGIIREPMCS WKPLDTVVPD TTNNRQRQEE GERCRDLEEK HRLYGELEAI YNLAKMGEGN  180
QNQTGSGSAL TGENCPKNVG FPVVFGDSNG LNAAPADTFR VDNRSEDSIG EEVSVTKIQK  240
RKRKRXMKEQ LSSMTRFFEN LVKQVVDHQE NLHKKYLEVI EKMEKERRER EEAWRCQAEE  300
NHKREAIAKL HEQAIASSRE ALIVSYIEKI TGQRVNLPPR KTPLLLQPDN LSEPETAEEL  360
TPSKAEHTNS RWPQNEVEAL ILVRSSVESK FAEQGSKGHV WEEVSALMAS MGYQKSARRC  420
KQKWENINKY FRKTKDAAKK RPLQSKTCSY FSQLGQLYSK TPTVPSSSSS VSMDVSIQRQ  480
GYSELLEAFI AGRETGVTHN LPNGNFESSE MGLSRLDFNG IGDGKVEHMQ GESRKEKEND  540
EDDENMDERE DTDGDDSDEX GRA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008377822.20.0trihelix transcription factor GT-2-like isoform X1
TrEMBLA0A498J7450.0A0A498J745_MALDO; Uncharacterized protein
STRINGXP_008377822.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139981421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.24e-36Trihelix family protein