PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000286804

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

FAR1

Protein Properties

Length: 1389aa MW: 158262 Da PI: 5.4555

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000286804	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	87.5	2e-27	76	163	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e+++ ++r+ ++++t+Cka+++vk++ dgkw ++++ +eHnHel p MDP0000286804 76 SFYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGVTPESDSG---TSRRPTVKKTDCKASMHVKRRADGKWIIHEFIKEHNHELLP 163 5**************************************999888...7788889*****************************975 PP
2	FAR1	26	3e-08	1057	1111	2	57
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtrae 57 +Y+eYA +vGF + ++ s++sk++g++++ + Cs+ g++++ + ++ r++++ MDP0000286804 1057 YYREYAWSVGFGIIIKVSRRSKKSGKFIDIKIACSRFGSKHDFIYA-TSGRNKKPA 1111 9**************************************9987766.555555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.7E-25	76	163	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.3E-22	283	375	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.175	563	599	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.6E-5	573	598	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.5E-7	574	601	IPR006564	Zinc finger, PMZ-type
Pfam	PF03101	2.3E-6	1057	1104	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.1E-23	1166	1256	IPR018289	MULE transposase domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010018	Biological Process	far-red light signaling pathway
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1389 aa Download sequence Send to blast
MDRNQNSGET VVDGPEKMSV GAVNENMNMV AVAEEVQNRG GGVITSPEKD VQVFEGEADF 60 EPCNGIEFES HEAAYSFYQE YAKSMGFTTS IKNSRRSKKS KEFIDAKFAC SRYGVTPESD 120 SGTSRRPTVK KTDCKASMHV KRRADGKWII HEFIKEHNHE LLPALAYHFR IHRNVKLAEK 180 NNVDILHAVS ERTRKMYVEM SRHSGGYQST GFPRADTNYQ FDKCRDLSLD LGDAQVMLEY 240 FKRIQKENPN FFYAIDLNEE RRLRNLFWVD AKSRSDYKSF NDVVSFDTSY IKINDKLPIA 300 PFVGVNNHFQ SMLLGCALVA DDTKSTFVWL LKTWLRAMGG QGPKVIITDQ DQTLKAAIGE 360 VFPDARHCFS LWSVLEKIPE TLAHVIKRHD NFLSKFNECI FKSSTDEQFV FRWWEMVNSF 420 ELQDDEWIRL LYDDRNRWVP TYIGDTFLAG MCTPQRSESM NSFFDKYIHR KISLREFVKQ 480 YGTILQNRYE EESIADFDTW HKQPALKSPS PWEKQMSTVY THAVFKKFQV EVLGVVGCQP 540 KKEHEDGPTT TFRVQDCEKD EYFMVAWNET KSEVSCSCHL FEYKGFLCRH TLIVLQMCGL 600 SSIPSHYILK RWTKDAKIRQ SMVEETERVQ TRVQRYNDLC KRAIELSEEG SSSEETYNIA 660 LRTLVEALKN CVNVNNSNGT VIEFSGTVHG IREAEEENQG SPAAKAIRKR NTNRKRKVPA 720 KQDGVLVESQ DSLQQMDNLS SDGIALNGYY GAQQNVHGLV QLNLMEPPHD SYYVNQQSMQ 780 GLGQLNSIAP NHDGFFGAQQ SIHGMGQLDF RPSSSFSYSL QICSADRYLE CTNQCLVSED 840 IEVHGLEVCK SILCNAKQRD LELLSCEQDQ LAIRSDKDVN IVDVTDEINV DAEPSSPIAS 900 DRVKEVDGFS AEVSVMSDKD VNVVDAPYEI IVEVNVSSQT TGGHFKEVDG LNAEQSVVSD 960 RDVDIVDVND EINVDKEHVS SPTSDRVKEV DGLNADKSVE SDKDVDIVDI TEQCVSSLND 1020 QSDLNNVGVD SLDKGKGVVE EPENGLEFES KEEAYSYYRE YAWSVGFGII IKVSRRSKKS 1080 GKFIDIKIAC SRFGSKHDFI YATSGRNKKP ATVVPQKTGL QLALDEEDDE DPNFFYAIDF 1140 DHEKRLRSVF WVDSKCKHDY SSFCDVVFFD TYYVSNNYKI PFVPIVGVNH HCLYILLGCA 1200 LIGEETTSAF IWLKQTWLRA VGGQAPGVVI TDQEKYLEEA VEDVFTDARH CFCLWHDLFL 1260 VGLSTKERSG SKTSFFDGYI SQEATFKDFV EQRFHYFNVN NSVRSVSEPS VSANHGFNDV 1320 EVVNPSSSVA KLSNRKKTYK KRKELMKSRA HEIDNCHVPQ QESERLVHFL YASVERQFGK 1380 TISLRPIFT

Sequence ? help Back to Top

Protein Sequence Length: 1389 aa Download sequence Send to blast

MDRNQNSGET VVDGPEKMSV GAVNENMNMV AVAEEVQNRG GGVITSPEKD VQVFEGEADF  60
EPCNGIEFES HEAAYSFYQE YAKSMGFTTS IKNSRRSKKS KEFIDAKFAC SRYGVTPESD  120
SGTSRRPTVK KTDCKASMHV KRRADGKWII HEFIKEHNHE LLPALAYHFR IHRNVKLAEK  180
NNVDILHAVS ERTRKMYVEM SRHSGGYQST GFPRADTNYQ FDKCRDLSLD LGDAQVMLEY  240
FKRIQKENPN FFYAIDLNEE RRLRNLFWVD AKSRSDYKSF NDVVSFDTSY IKINDKLPIA  300
PFVGVNNHFQ SMLLGCALVA DDTKSTFVWL LKTWLRAMGG QGPKVIITDQ DQTLKAAIGE  360
VFPDARHCFS LWSVLEKIPE TLAHVIKRHD NFLSKFNECI FKSSTDEQFV FRWWEMVNSF  420
ELQDDEWIRL LYDDRNRWVP TYIGDTFLAG MCTPQRSESM NSFFDKYIHR KISLREFVKQ  480
YGTILQNRYE EESIADFDTW HKQPALKSPS PWEKQMSTVY THAVFKKFQV EVLGVVGCQP  540
KKEHEDGPTT TFRVQDCEKD EYFMVAWNET KSEVSCSCHL FEYKGFLCRH TLIVLQMCGL  600
SSIPSHYILK RWTKDAKIRQ SMVEETERVQ TRVQRYNDLC KRAIELSEEG SSSEETYNIA  660
LRTLVEALKN CVNVNNSNGT VIEFSGTVHG IREAEEENQG SPAAKAIRKR NTNRKRKVPA  720
KQDGVLVESQ DSLQQMDNLS SDGIALNGYY GAQQNVHGLV QLNLMEPPHD SYYVNQQSMQ  780
GLGQLNSIAP NHDGFFGAQQ SIHGMGQLDF RPSSSFSYSL QICSADRYLE CTNQCLVSED  840
IEVHGLEVCK SILCNAKQRD LELLSCEQDQ LAIRSDKDVN IVDVTDEINV DAEPSSPIAS  900
DRVKEVDGFS AEVSVMSDKD VNVVDAPYEI IVEVNVSSQT TGGHFKEVDG LNAEQSVVSD  960
RDVDIVDVND EINVDKEHVS SPTSDRVKEV DGLNADKSVE SDKDVDIVDI TEQCVSSLND  1020
QSDLNNVGVD SLDKGKGVVE EPENGLEFES KEEAYSYYRE YAWSVGFGII IKVSRRSKKS  1080
GKFIDIKIAC SRFGSKHDFI YATSGRNKKP ATVVPQKTGL QLALDEEDDE DPNFFYAIDF  1140
DHEKRLRSVF WVDSKCKHDY SSFCDVVFFD TYYVSNNYKI PFVPIVGVNH HCLYILLGCA  1200
LIGEETTSAF IWLKQTWLRA VGGQAPGVVI TDQEKYLEEA VEDVFTDARH CFCLWHDLFL  1260
VGLSTKERSG SKTSFFDGYI SQEATFKDFV EQRFHYFNVN NSVRSVSEPS VSANHGFNDV  1320
EVVNPSSSVA KLSNRKKTYK KRKELMKSRA HEIDNCHVPQ QESERLVHFL YASVERQFGK  1380
TISLRPIFT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00434	DAP	Transfer from AT4G15090	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008378343.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A251Q247	0.0	A0A251Q247_PRUPE; Uncharacterized protein
STRING	XP_008378343.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Link Out ? help Back to Top
Phytozome	MDP0000286804

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]