PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000282600
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 298aa    MW: 32316.6 Da    PI: 8.3351
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000282600genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.11e-10170217455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  MDP0000282600 170 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 217
                    8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.33E-16164223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.82E-10164221No hitNo description
Gene3DG3DSA:4.10.280.104.8E-16166222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828166216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-8170217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-11172222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MDPPTLVNEC SFSNAXATSF LSEIWPLPMN GSGARAGDSG GALGLRRPNF SQSFAQFGDV  60
SGAIRDVLAG SDPNPMSLDH RGGGGHGGAA RKRREADDES PKSSGNIGAS DCDGKRLKTS  120
ARCRDESARE SKAEAETSSG KPAEQNAQPP DPPKQDYIHV RARRGQATDS HSLAERARRE  180
KISERMKILQ DLVPGCNKVI GKALVLDEII NYIQSLQRQV EARALSLFGM LQFLSMKLEA  240
VNTRMNPGIE AFPSKDFGQQ TFDNAAMAFS TQPPREYXRG NSPEWLHMQV GGGFNRTT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.7310.0bud
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008339960.20.0transcription factor BHLH089-like
SwissprotQ69WS31e-74BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A498HK160.0A0A498HK16_MALDO; Uncharacterized protein
STRINGXP_008339960.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-90BIG PETAL P