PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000281471
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Trihelix
Protein Properties Length: 461aa    MW: 49494.9 Da    PI: 8.5609
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000281471genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.52.3e-15205292186
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    +W++  + +Liea  e+  +l+rg+lk+++W+ev++++      +++ ++ +qCk++++ ++k+yk +k   + +  +  s++p++++l+
  MDP0000281471 205 CWSEGATAVLIEAWGERYLELSRGNLKQKHWKEVADVVssreNYGKIPKTDIQCKNRIDTVKKKYKLEKSKIGAG--GGPSKWPFYERLD 292
                    7*************************************8766667789999******************999997..67779******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.1E-26203294No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MAKHIKIPFX MSXLEAAHEN DIELEGPVWV VKWLQNPNLT EYALNCRVQR ATLLLIAKHH  60
GVLRQLLLSR LFPDAGDGDS TSSPIKSRHL DCRVPYPTTA SSQIGDSLRT GAVYYRILDL  120
DRTDPDPRTI AVVSMEEDDE IQSPASGGSR SPASTRQNGR ITVTVAVPPA QVPAPTPTQN  180
KILTLALPSS AQQQGRSSGG GREDCWSEGA TAVLIEAWGE RYLELSRGNL KQKHWKEVAD  240
VVSSRENYGK IPKTDIQCKN RIDTVKKKYK LEKSKIGAGG GPSKWPFYER LDHLIGPSGA  300
KVGPGSAGGG GSGGFSGHSK KMPVGLRHSQ FIGRRAKREG KIRQRDLVES DSDESREPSP  360
ISIDNEIFEQ KRRTANANVN ANASVRKRVG GGLRPCAVGR EKGEGGGGGG GGGGEAAAGG  420
GDGEAEDEVC QGVGVAEAAV FHEDTGGDFS AEEWKWEKKQ G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150422e-36AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008353928.20.0trihelix transcription factor ASIL2-like
TrEMBLA0A498HDV00.0A0A498HDV0_MALDO; Uncharacterized protein
STRINGXP_008353928.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79193044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.11e-47sequence-specific DNA binding transcription factors