PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

MDP0000281062

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

MYB_related

Protein Properties

Length: 139aa MW: 16185.5 Da PI: 9.8588

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000281062	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.9	2.3e-08	50	80	1	32
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 r rWT+ E+ ++++a k++G W +I ++++ MDP0000281062 50 RERWTEGEHNKFLEALKLYGRA-WQRIEERIN 80 78****************88.**99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.01E-6	39	80	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.0E-9	48	94	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	4.5E-5	50	78	IPR009057	Homeodomain-like
Pfam	PF00249	3.3E-6	50	82	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MGLAWAKLCA ARGIFWSVEN XLYRLVMDTH SSGEDFLVKA RKPYSTTKQR ERWTEGEHNK 60 FLEALKLYGR AWQRIEERIN AASIYPSATA AYLQGMHIDF TSHIVKVFLA LKCFQAVGAE 120 YGKRFLRLLD LLDLSRFMW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2N9I3T0	4e-25	A0A2N9I3T0_FAGSY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2956	33	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01060.4	6e-26	MYB_related family protein

Link Out ? help Back to Top
Phytozome	MDP0000281062