PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000280921
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 340aa    MW: 38629.6 Da    PI: 6.1213
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000280921genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH247.2e-08220264655
                    HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +++ r RR++i ++ + L +l+P        K++ ae+L+ A +Y+k+Lq
  MDP0000280921 220 SIAARERRRKITEKTQALGKLVPGG-----SKMNTAEMLTAAYNYVKYLQ 264
                    67889******************95.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.74E-9213267No hitNo description
PROSITE profilePS5088812.487214263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-11215272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-11218271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-5220264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-9220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MYILPFRTRL VHVQLLDEIL NILLCMHGFK HIYFMALSPL PPQAFDSEMT ITNCFQQNLE  60
AELLTADFLQ YYYYSEYNIN SNFSNSFVDE YHSWYDPYDL LNLENHDHDT TTDDHLLLPH  120
NSFSLTAPDF NPYPNPKRQK CFQDCFSPDF TLSNGFVPNL CPLPSLMPVP KFFPTPLPKF  180
DQLPEDLTNS AGANINHGHE SITNVANKKK VGEKCVSAQS IAARERRRKI TEKTQALGKL  240
VPGGSKMNTA EMLTAAYNYV KYLQAQVGXL QLMGSFKELK EAPPIEELQV VASPVLQEKL  300
YLENNCLVPK KFVAILAXHF DAQSKPSLSN NLNLLLTSTT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207228KKKVGEKCVSAQSIAARERRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009361875.10.0PREDICTED: uncharacterized protein LOC103952075
TrEMBLA0A498JYK80.0A0A498JYK8_MALDO; Uncharacterized protein
STRINGXP_008364271.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34593065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.15e-22bHLH family protein