PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000278621

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NF-YA

Protein Properties

Length: 292aa MW: 32426.2 Da PI: 8.7031

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000278621	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	102.1	5.4e-32	136	192	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+k k+rkpylheSRh+hAlrR+Rg+gGrF MDP0000278621 136 EEPVFVNAKQYHGILRRRQSRAKAESENKA-LKNRKPYLHESRHQHALRRARGCGGRF 192 69*************************9.9***********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	5.9E-36	134	195	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.071	135	195	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	4.0E-27	137	192	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.5E-23	138	160	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	140	160	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.5E-23	169	192	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MVRLLHCDLL HIVFQLSTYN ILMTSSVRHH SDNSDSDDQQ SHSESQVHSS LPAIGMSHPG 60 IPTTNMQYAV PPQFGTGHAV APGAYPYPDP YYRSIFAPYE TQPYPSQPYG AAQPTVHLQL 120 MGIQQAGVPL PSDAVEEPVF VNAKQYHGIL RRRQSRAKAE SENKALKNRK PYLHESRHQH 180 ALRRARGCGG RFLNAKKNEN EQDEMTSGDK SQSNINLNSD KNELASSDRT YEHEQVGTQG 240 VFGRGRTVQY EMVIDLYSKI KGKGLGWAAY SFNTRPPGAI GAGCKTIFNG ES

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-20	135	200	1	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009362237.1	1e-150	PREDICTED: nuclear transcription factor Y subunit A-7-like
Swissprot	Q84JP1	2e-68	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A498JVB2	1e-162	A0A498JVB2_MALDO; Uncharacterized protein
STRING	XP_008372229.1	1e-153	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5379	33	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	2e-54	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	MDP0000278621

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]