PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000278207
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 900aa    MW: 102764 Da    PI: 9.4137
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000278207genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.81.7e-102273348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                      W t+E++ll++av+++G+ +W+++a ++         +t+  ck ++++++
    MDP0000278207 22 TWGTWEELLLACAVHRFGTQSWDSVATELRkrssnlHLLTPHACKRKFHDLR 73
                     7*****************************9999997799999999999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001671.44E-42272No hitNo description
PfamPF002494.5E-102272IPR001005SANT/Myb domain
SMARTSM002970.00193385IPR001487Bromodomain
CDDcd043697.75E-10310380No hitNo description
Gene3DG3DSA:1.20.920.102.8E-11310394IPR001487Bromodomain
SuperFamilySSF473701.7E-11310389IPR001487Bromodomain
PfamPF004391.3E-6311370IPR001487Bromodomain
PROSITE profilePS500149.711312366IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 900 aa     Download sequence    Send to blast
MAEAMADFGR GSPXFPEKQT PTWGTWEELL LACAVHRFGT QSWDSVATEL RKRSSNLHLL  60
TPHACKRKFH DLRRHFNHSD NVSAASNDDK SPIPWLHQLR QRRLDELRRE LQRYDRSIVC  120
LQSKVERLKE VREHSLRETQ KPVEKSDLEK TGDEEIKPDD VSPEKKEISS DFLVHDGQSF  180
DESNTTDRKP EEPGTGYAGT GNGSEPNKSV EPAGEEIGSA EKSSNPAVED SCNGSSDSVA  240
KEPAGMESES QVNRSRRMNL PPRRGSQLNL SRWWISSRSY ALISLPPYSG AGSIPRRWRH  300
VNTGLMAVTD NPIYTKMIRQ XVDFEMVQTR LEGGWYSHCS RMLFFRDLLI ICNNAIVFFG  360
KMSPEYKAAC ELRSLLSKEM ARLAPKQDAP PEEEILTQPA PPLNPDPETS DSLLAKSKLS  420
LPLNACRKRS SIAARGSTSS SGPDTRKEQA TRDVKPAVNW KQKEVSLDEI EKLRVTXKRR  480
KERLGSSTRN NTSKNVRTRS YXNNDRSSDA NENSEXKSET EKKSRVVSSN ENSETKAEME  540
KKRNNNASGK KQSATNFLSR MKSSSSKTGS LLETSKNPEN NSKGRRAEQR KNGNGKGNTQ  600
KDQGSRRSSG GRQAAKEQES PSKRSHSKEE FAXEEVEDGL LERYXNDGND LRSSFALVIL  660
IIIQFMIAFD ALDVEIIDQV LIFNWSCLNF RDVYDLVKVE IKMLMSCLFQ LIPLESSLLM  720
VYDSLWTYVF HCHYTLEYFV YEHRSCIKIH LPSIWNYVKL CKGIVATFEC RWCSHLRLYR  780
HPGQDGCXNF MRASPGHLPG VVKCTDRIHT ARITAIQSNN RFVFRFRLLT AETKSLFSNR  840
IWNTKSRCFY RWMCLKLRMK NPKFDQTESL CSRHHHRMCS CCLQSRPAKD HPIVDSKSVP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008366631.20.0uncharacterized protein LOC103430277
TrEMBLA0A498IDU10.0A0A498IDU1_MALDO; Uncharacterized protein
STRINGXP_008350276.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.11e-44DNA-binding bromodomain-containing protein