PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000275840 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | bHLH | ||||||||
Protein Properties | Length: 423aa MW: 47260.7 Da PI: 7.5198 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.9 | 1.3e-11 | 127 | 171 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + +++r RR+++N++f++Lr l+P+ + ++Ka+i+ A+ YI++L MDP0000275840 127 NLAIDRVRRQQLNDKFFTLRNLIPNX-----TQNDKASIVGDAIGYINEL 171 45899********************9.....79**************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 7.0E-12 | 120 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.03E-10 | 120 | 175 | No hit | No description |
SuperFamily | SSF47459 | 3.81E-14 | 122 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.221 | 122 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.3E-9 | 127 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.7E-10 | 128 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MPNHDPLPPL PPPPPQPPQV LMDELSCHHH HHNHHSSMDI ELHNELGFNV DNPYNTTSGH 60 NDNGYTLPGS GNGSLFSSGG DEREGSGGGI YPDDGTITES FFEDGVMEFS REMGSIGRGR 120 NRKESKNLAI DRVRRQQLND KFFTLRNLIP NXTQNDKASI VGDAIGYINE LLRTVDELKL 180 LVEKKRCGRE RINRHKTEQD XGAAGDDESC NIKPXGEPHD QSYNNGSLRS SWLQRKSKYT 240 EVXIRIIEDE VTIKLVQRKK INLLLFVSRL LDELQLDLHH VAGGQIGNSY SFLFNTKMYE 300 GSCLYASAIA GKFIEVHSSN TTARNLHNFK PETLPADRAL AAPNPNSRSP HKFDTKLSKL 360 KPASTASVAA STICAPRPDQ NQSTRNRTIL PASAEDFRSA AAIQSPESQI WSNRSHLRLW 420 QRS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.30299 | 0.0 | bud| fruit |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017188288.2 | 0.0 | transcription factor bHLH10-like | ||||
Swissprot | Q84TK1 | 5e-71 | BH010_ARATH; Transcription factor bHLH10 | ||||
TrEMBL | A0A498JGJ3 | 0.0 | A0A498JGJ3_MALDO; Uncharacterized protein | ||||
STRING | XP_008378661.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3743 | 32 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31220.1 | 4e-73 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000275840 |
Publications ? help Back to Top | |||
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