PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000275635

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bHLH

Protein Properties

Length: 281aa MW: 31973.7 Da PI: 6.7197

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000275635	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.6	7.9e-07	2	40	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R+dr+N+ f+eL l + +K++Ka+iL+ +++ +k+L MDP0000275635 2 RMDRLNEHFFELGNTLDLD----RPKNDKATILTDTIQMLKDL 40 9*************997....79*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.626	1	40	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-8	2	56	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.79E-4	2	44	No hit	No description
Gene3D	G3DSA:4.10.280.10	9.2E-8	2	63	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-4	2	40	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MRMDRLNEHF FELGNTLDLD RPKNDKATIL TDTIQMLKDL NADVNKLKVE CASLTDESRE 60 LTQEKNELRE EKASLKSDIE NLNVQXQQRL RVMLPWAGMD PPIVMAPPYS YPMPVAVPPS 120 PIXMHLSLQL YPNFHAQNXA AMPNPXSTFV PYPVPTNPPV EHPSPXYASV SHNLSKQDSR 180 RRSSDHQGGC HVERCDDSKD VATDLELKIP GSSAPQDSSS GVKKANRAPM TYDDWKSSPT 240 SKRRDLIRNL DCVLEILXES HWFWTTTIVE KVLRREFKGS R

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008336910.1	1e-134	transcription factor bHLH121-like isoform X2
Swissprot	Q9LT23	6e-62	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A498KGZ8	1e-132	A0A498KGZ8_MALDO; Uncharacterized protein
STRING	XP_008336910.1	1e-133	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2282	33	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	3e-65	bHLH family protein

Link Out ? help Back to Top
Phytozome	MDP0000275635

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]