PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000274723

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bZIP

Protein Properties

Length: 416aa MW: 46680.8 Da PI: 6.5841

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000274723	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.6	2e-11	95	133	2	40
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 + +k++rr+++NReAAr+sR RKka++++Le+ +L + MDP0000274723 95 PTDKVQRRLAQNREAARKSRMRKKAYVQQLETSRLKLVQ 133 579****************************86555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.9E-9	89	141	No hit	No description
SMART	SM00338	2.0E-7	94	154	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.9E-8	96	136	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.99	96	138	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.38E-7	98	136	No hit	No description
CDD	cd14708	1.33E-22	98	150	No hit	No description
PROSITE pattern	PS00036	0	101	116	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.3E-26	218	293	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MPSFHLCLLL PSPSLSLFSS MNSPSTQFVT SRRMGVYEPI HQISMWDESF RSSGNFNASA 60 SMILDEDIKL HNQSEDTSHG ILGPSSKYDQ ETTKPTDKVQ RRLAQNREAA RKSRMRKKAY 120 VQQLETSRLK LVQLEQELDR ARQQGVYIGG GLDSNPLGFS GTINSGLFVS MLSAISSLCC 180 VIAFITCPRI LKFETPSSAG VTTFEMEYGQ WMEEQNRQIC ELRTALHACI SDVELXFLVD 240 SGMNHYFELF SMKSTAAKAD VFYVVSGVWE TSAERFFSWI GGFRPSEILK VLQPHLDPLT 300 DQQALDVHNL RQSCQQAEDA LSQGMDKLQH TLAETVAAGQ LGEGSYVPQM ANAMERLEAL 360 VSFVTQADHI RRETLQQMSR ILTTRQAARG LLALGEYFQR LRALSSLWAT RPHEPA

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MPSFHLCLLL PSPSLSLFSS MNSPSTQFVT SRRMGVYEPI HQISMWDESF RSSGNFNASA  60
SMILDEDIKL HNQSEDTSHG ILGPSSKYDQ ETTKPTDKVQ RRLAQNREAA RKSRMRKKAY  120
VQQLETSRLK LVQLEQELDR ARQQGVYIGG GLDSNPLGFS GTINSGLFVS MLSAISSLCC  180
VIAFITCPRI LKFETPSSAG VTTFEMEYGQ WMEEQNRQIC ELRTALHACI SDVELXFLVD  240
SGMNHYFELF SMKSTAAKAD VFYVVSGVWE TSAERFFSWI GGFRPSEILK VLQPHLDPLT  300
DQQALDVHNL RQSCQQAEDA LSQGMDKLQH TLAETVAAGQ LGEGSYVPQM ANAMERLEAL  360
VSFVTQADHI RRETLQQMSR ILTTRQAARG LLALGEYFQR LRALSSLWAT RPHEPA

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269\|PubMed:8628224}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017188605.2	0.0	transcription factor TGA4-like isoform X2
Swissprot	Q39162	0.0	TGA4_ARATH; Transcription factor TGA4
TrEMBL	A0A498KP62	0.0	A0A498KP62_MALDO; Uncharacterized protein
STRING	XP_008376117.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1096	34	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	0.0	TGACG motif-binding factor 4

Link Out ? help Back to Top
Phytozome	MDP0000274723

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana. Plant J., 2017. 92(2): p. 305-316 [PMID:28771873]