PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000274034
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family FAR1
Protein Properties Length: 744aa    MW: 84570.9 Da    PI: 6.6713
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000274034genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1995.1e-31120214190
           FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                    +fYn+YAk++GFs+r+++ ++sk++++i++r+f+Cskeg+r+e++ k     ++k+rr ra tr gCka ++v+k+++g+w+v kle++HnHel+
  MDP0000274034 120 NFYNAYAKQTGFSIRVNSYYRSKKDNSIISREFCCSKEGFRREKNAKrdsgeDVKRRRARAITREGCKALMTVRKRENGRWYVVKLEKDHNHELV 214
                    6******************************************999999999999**************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-28120214IPR004330FAR1 DNA binding domain
PfamPF105516.7E-33334426IPR018289MULE transposase domain
PROSITE profilePS5096611.338616652IPR007527Zinc finger, SWIM-type
PfamPF044341.4E-9626651IPR007527Zinc finger, SWIM-type
SMARTSM005757.8E-10627654IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 744 aa     Download sequence    Send to blast
MGFISAYGRS VSAVRSPNTP APNLNHRTAH VVFVFGKRKQ SYIIMEAEPS GECVGKVVDS  60
NVALEGESYG HCVVEDVEAP VVLDDGKEGD VEIDLSQLVG GGIIEPTLGM EFTSEDDARN  120
FYNAYAKQTG FSIRVNSYYR SKKDNSIISR EFCCSKEGFR REKNAKRDSG EDVKRRRARA  180
ITREGCKALM TVRKRENGRW YVVKLEKDHN HELVTPAMRH FLRSHKQDFD ADKSCSNSFS  240
SPGLSLDASA DVLADSGSFG KMAFAVQSDV NYIGSGRLST FGIDAQSLLG FFKVMQASDP  300
AFYYAIQVDE EERLSSVFWV DTRSRIAYNC FSDVVAFDTT YQVNQYKMPF APFTGVNHHK  360
HSVLFGCALL ADESESTFIW LFTTWLEAMS GRQPGLIITD YDPAISRAVQ QVFPQSIHRY  420
CKWHIISKMP KEMGNVYSVT PRTFQVEFDR CINKSETPDE FESAWQMLLD KYSLRESDWL  480
QSLYIDRKLW VPVYIRDAFF AGLYAAQRSG TVNSLFDGYV NAGTTLQDFA EQYEKALDER  540
YEKEAKAEFE TFYTKPVLKT PLPVEKQGAD IYTRNMFTIF QDEVFESLVF AVKLSAEDRG  600
TRTYEVARFN EEHKIYFVAF NIAEQLASCS CKMFEFEGIL CRHVLAVFKA TNVFTLPPCY  660
ILKRWTRNAK EEAMLDVLPC VELQGKSQKG RNLQYNVLYH EAIKCAEEGM ASDQIFKVAL  720
NALREARVKI AGAKRNAMKS FPQN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008368439.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_017186875.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A251Q8U00.0A0A251Q8U0_PRUPE; Uncharacterized protein
STRINGXP_008368438.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5