PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000273608 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 313aa MW: 34560 Da PI: 5.9764 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.8 | 7.7e-18 | 179 | 233 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k MDP0000273608 179 RKKLRLSKDQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 233 778899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 127.4 | 6e-41 | 179 | 269 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlsk+q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk MDP0000273608 179 RKKLRLSKDQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALK 269 69*************************************************************************************9.555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 2.8E-8 | 27 | 145 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 2.9E-17 | 155 | 236 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.71E-18 | 170 | 236 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.086 | 175 | 235 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.0E-16 | 177 | 239 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.87E-16 | 179 | 236 | No hit | No description |
Pfam | PF00046 | 2.4E-15 | 179 | 233 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 210 | 233 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 6.1E-11 | 235 | 269 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 4.5E-26 | 235 | 278 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MELALSLGDA SKPFLFLDKA PKIGSNKDLG FCMGLGSAAR SDESSRESTH EVYDQEEGRR 60 SRVSSDPPLQ LNLLPSAPVP RSRASSQLSF PWLTDNLAVS EPAGSSDGTG IGFDVNRMPG 120 VVASAEEAED TAAPLSSPNS TVSSFQMDFG MRSGGRSSKR DMEVDADRAS DDEENGSTRK 180 KLRLSKDQSA FLEESFKEHS TLNPKQKLAL AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD 240 CEYLKRCCET LTEENRRLQK ELQELRALKT SQPFYMQLPA TTLTMCPSCE RVVTTASXXX 300 TTPPPPPPPP TTT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 177 | 183 | TRKKLRL |
2 | 227 | 235 | RRARTKLKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.23238 | 0.0 | bud| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028948814.1 | 0.0 | homeobox-leucine zipper protein HOX11-like | ||||
Swissprot | P46665 | 1e-103 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | A0A498I3R4 | 0.0 | A0A498I3R4_MALDO; Uncharacterized protein | ||||
STRING | XP_008392143.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2335 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 9e-91 | homeobox from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | MDP0000273608 |