PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000273563 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB_related | ||||||||
Protein Properties | Length: 130aa MW: 14622.3 Da PI: 10.5948 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.6 | 3.2e-14 | 38 | 82 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT eE++++++a ++ + Wk+I +g +t q++s+ qky MDP0000273563 38 RESWTDEEHDKFLEALXRFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 82 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.46E-18 | 32 | 88 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.436 | 33 | 87 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-8 | 36 | 88 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-18 | 36 | 85 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.1E-10 | 37 | 85 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-11 | 38 | 82 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.46E-9 | 40 | 83 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MYSTXANSHQ SSMGMASTPS SDGSGKKVRK PYTITKSRES WTDEEHDKFL EALXRFDRDW 60 KKIEDFVGSK TVIQIRSHAQ KYFLKVQKSG TTAHVPPPRP KRKAAYPYPQ KASKNGSPLL 120 KIVALCLSIA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.2510 | 1e-117 | bud| cell culture| flower| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:21474993, ECO:0000269|PubMed:21483796, ECO:0000269|PubMed:23638299}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:22902701, ECO:0000269|PubMed:23638299}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB627311 | 0.0 | AB627311.1 Malus x domestica mRNA, microsatellite: MEST187, clone: SAM01_15_D05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009342304.1 | 5e-72 | PREDICTED: protein REVEILLE 8 isoform X3 | ||||
Swissprot | Q8RWU3 | 6e-59 | RVE8_ARATH; Protein REVEILLE 8 | ||||
TrEMBL | A0A498K1L7 | 2e-75 | A0A498K1L7_MALDO; Uncharacterized protein | ||||
STRING | XP_008345424.1 | 7e-73 | (Malus domestica) | ||||
STRING | XP_008355644.1 | 2e-73 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2956 | 33 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09600.2 | 2e-48 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000273563 |
Publications ? help Back to Top | |||
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