PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000271785
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 264aa    MW: 29485.5 Da    PI: 10.1972
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000271785genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.81.3e-15341101597
                    -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
             B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                    +l+lp  f  ++ +++++ k+ ++  +   sW+v +  r ++g+ ++++GW+eFvk ++Lk+gDf+vFk+ gr+ f  +v v+
  MDP0000271785  34 QLSLPAGFS-QN-LNERNMKKAVI-ESCQGSWQVGV-ARTGDGTLYFEGGWEEFVKYHNLKVGDFLVFKHLGRMVF--HVNVY 110
                    689999997.44.34444445555.556679*****.4666666****************************9999..66664 PP
2B339.97.7e-131512351087
                    HHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE...EEETTE..EEE-.......TTHHHHHHHHT--TT-EEEEEE-SS CS
             B3  10 vlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkl.iyrkksgr..yvlt.......kGWkeFvkangLkegDfvvFkldgr 87 
                      +++ +++p +f+++hg+  +++  ++l+    g +W v+l ++++++++  +  +       +GW +F ++n+Lk gD + F l++ 
  MDP0000271785 151 LPSKCYVTIPSEFVKAHGLGDRKK--MILKVrFVGGKWPVELgTWQGGRRGaaI--SlrtairtRGWYKFYEDNRLKIGDCCKFVLKEV 235
                    3456999**********8886665..5555436899******555444444563..33355666********************98754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.9720113IPR003340B3 DNA binding domain
SMARTSM010191.8E-928113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-1833113IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-1633119IPR015300DNA-binding pseudobarrel domain
PfamPF023626.9E-1234107IPR003340B3 DNA binding domain
CDDcd100171.55E-1434110No hitNo description
Gene3DG3DSA:2.40.330.101.0E-14135234IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-15135233IPR015300DNA-binding pseudobarrel domain
CDDcd100172.34E-11140234No hitNo description
SMARTSM010190.0014141250IPR003340B3 DNA binding domain
PROSITE profilePS5086310.193142250IPR003340B3 DNA binding domain
PfamPF023622.7E-10150235IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MASPLLFCHP LVRWRAPIGP LRLYIQRCSV PQPQLSLPAG FSQNLNERNM KKAVIESCQG  60
SWQVGVARTG DGTLYFEGGW EEFVKYHNLK VGDFLVFKHL GRMVFHVNVY EPLGCEKAFP  120
PPPPPAAAAA AATSTSSPLF FLKSISETHS LPSKCYVTIP SEFVKAHGLG DRKKMILKVR  180
FVGGKWPVEL GTWQGGRRGA AISLRTAIRT RGWYKFYEDN RLKIGDCCKF VLKEVPDSKS  240
KPVIMEVDIK RMVLGSSKAV VNFE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028950060.11e-158putative B3 domain-containing protein Os04g0346900
STRINGXP_008394134.11e-168(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14574917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.11e-19B3 family protein