PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000271048

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Trihelix

Protein Properties

Length: 353aa MW: 39019.1 Da PI: 9.9248

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000271048	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.1	7.4e-16	16	98	1	83
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 +Wt++e +aLi ++++++ +l+r++lk ++W++v++ + ++++qC++k+e+l++r++ +ke+++ + ++ p+f+ MDP0000271048 16 CWTHDESHALISLYKDRWLALGRSNLKSADWDSVASSVndqcPLVSPPKTAIQCRHKMEKLRRRFRTEKERASTH-PGP---APFFS 98 8***********************************6544444558999******************9987.333...35665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.3E-17	15	101	No hit	No description
PROSITE profile	PS50090	6.377	17	77	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MASPTEPKPR KFPPPCWTHD ESHALISLYK DRWLALGRSN LKSADWDSVA SSVNDQCPLV 60 SPPKTAIQCR HKMEKLRRRF RTEKERASTH PGPAPFFSSF DLFQPMIDLE CDSPLVFGSN 120 PDPENRIAVE YGGGFRARND ESFRYLADSD PNLSDPYGTT SKGSGFGGGF RVKNLVRGPN 180 SGLSAGFDRY GSRGSDGGSG FPVKSLGDRN FWPSDFRSKS YGKSNDKFNP KLISKRSGSN 240 GVGSGSRFNQ KFKGSLHSNG VGMEDLGGSS SGKGTDDPIE AMASSIEFLG EVFVKMEKRK 300 MEMAGEMAKM RMKMEMKQNQ LVMESQKQMV DACVNALWET KKKKKKVVSL DDS

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MASPTEPKPR KFPPPCWTHD ESHALISLYK DRWLALGRSN LKSADWDSVA SSVNDQCPLV  60
SPPKTAIQCR HKMEKLRRRF RTEKERASTH PGPAPFFSSF DLFQPMIDLE CDSPLVFGSN  120
PDPENRIAVE YGGGFRARND ESFRYLADSD PNLSDPYGTT SKGSGFGGGF RVKNLVRGPN  180
SGLSAGFDRY GSRGSDGGSG FPVKSLGDRN FWPSDFRSKS YGKSNDKFNP KLISKRSGSN  240
GVGSGSRFNQ KFKGSLHSNG VGMEDLGGSS SGKGTDDPIE AMASSIEFLG EVFVKMEKRK  300
MEMAGEMAKM RMKMEMKQNQ LVMESQKQMV DACVNALWET KKKKKKVVSL DDS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008373726.2	0.0	protein FIP2-like
TrEMBL	A0A498JNM8	0.0	A0A498JNM8_MALDO; Uncharacterized protein
STRING	XP_008373726.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13797	14	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	3e-25	Trihelix family protein

Link Out ? help Back to Top
Phytozome	MDP0000271048