PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000269890
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 242aa    MW: 26376.2 Da    PI: 6.3992
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000269890genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.6e-13163208655
                    HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +++Er RR ri +++ +L+el+P+     +k  + a++L +AveY+k Lq
  MDP0000269890 163 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLDEAVEYVKFLQ 208
                    689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.932157207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-16160219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.59E-11161212No hitNo description
Gene3DG3DSA:4.10.280.103.9E-16162219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-13163213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-10163208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MQRAAGGSSG GEVSRGGGGL GRFSSAPAAW LEALLEEDEE DPLKPTQCLT ELLADNTPCT  60
TVDPASYEAA DGYLSRQHSS PADFSGGGGS GGYFSGFGIP AHLDLVSSSS LSPNSSSSSA  120
NKRVREQHHF SSDSHVKVEE GGLEDSVSCR VRAKRGCATH PRSIAERVRR TRISDRIRKL  180
QELVPNMDKQ TNTADMLDEA VEYVKFLQKQ IQVIEGKMHT KKFETWQELS EDQRRCKCIA  240
KE
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008361617.11e-117transcription factor bHLH80-like
SwissprotQ9C8P83e-65BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A498HW051e-116A0A498HW05_MALDO; Uncharacterized protein
STRINGXP_008349452.11e-135(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91323043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.12e-37bHLH family protein