PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000267783

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

FAR1

Protein Properties

Length: 801aa MW: 91648.3 Da PI: 6.9458

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000267783	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83	4.8e-26	67	152	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY++YAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk++ +g+w+v++++++HnHel p MDP0000267783 67 FYKAYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRPNGNWYVYSFVKDHNHELLP 152 **************************************999877....9**********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.3E-24	67	152	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-26	265	358	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.979	545	581	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.3E-9	545	579	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.8E-7	556	583	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 801 aa Download sequence Send to blast
MSVGPMKTFA PLSFPTTFEG GCGVDLNFPT TTTVMDSSGP ALALATTSIA EPHDAMEFES 60 HEAAYTFYKA YAKSVGFGTA KLSSRRSRAS KEFIDAKFSC IRYGNKQQSD DAINPRPSPK 120 IGCKASMHVK RRPNGNWYVY SFVKDHNHEL LPDQAHFFRS HRNTDPLNND VRIRRRKSLA 180 AVSSLFSAYQ NVDCLESYLR NQHDKGRILV LEAGDAQLLL EYFMRLQEDN PKFFYAVDLN 240 EEHRLRNVFW VDAKAMEDYT NFNDVVFFDT TYFTNKYKIP LVLFIGVNHH IQPTLLGCAL 300 IADDTVYTFM WLMQTWFIAM GEQAPRVILT DQNDAIKAAI PAVFPGTRHC FSLWNIMEKM 360 HRQLEFLSMW HDSFLEKFTK CIFKSWSEQQ FEKRWWKLID RFNLREVGWM QSLYEDRTHW 420 APTFMRDISF AGLSPTSRSE SLNSSFDKYI QGDTSLQEFM ERYTAILEDR YEEEAKANFD 480 AWHGTPELKS PSPFEKQMSL VYTHEIFKNF QVEVLGAAAC HLKKENEDET ATTFSVKDFE 540 DNQNYTVEWN ESKSDIYCSC HSFEYKGYLC RHAIVVLQMS GVFIIPPKYI LQRWTNAAMS 600 RHTIGERVDE VQSKARRYND LCRRAIILGE EGSLSQESYD VALSAIKEAL KQCASLNNCL 660 ENNAKPHDSA IHGVCGVDEE NQCSTTSGAN KTPRRAGSGK EVARNGNSTS KKGKVPQLEA 720 MSFGMQDGHF QMHLIIPESD SYSLVIKSDG RWRSHKSESN ANHGSDPDVF GIESEKGRAN 780 KMKKDCHRGV GRGGVDRKEM E

Sequence ? help Back to Top

Protein Sequence Length: 801 aa Download sequence Send to blast

MSVGPMKTFA PLSFPTTFEG GCGVDLNFPT TTTVMDSSGP ALALATTSIA EPHDAMEFES  60
HEAAYTFYKA YAKSVGFGTA KLSSRRSRAS KEFIDAKFSC IRYGNKQQSD DAINPRPSPK  120
IGCKASMHVK RRPNGNWYVY SFVKDHNHEL LPDQAHFFRS HRNTDPLNND VRIRRRKSLA  180
AVSSLFSAYQ NVDCLESYLR NQHDKGRILV LEAGDAQLLL EYFMRLQEDN PKFFYAVDLN  240
EEHRLRNVFW VDAKAMEDYT NFNDVVFFDT TYFTNKYKIP LVLFIGVNHH IQPTLLGCAL  300
IADDTVYTFM WLMQTWFIAM GEQAPRVILT DQNDAIKAAI PAVFPGTRHC FSLWNIMEKM  360
HRQLEFLSMW HDSFLEKFTK CIFKSWSEQQ FEKRWWKLID RFNLREVGWM QSLYEDRTHW  420
APTFMRDISF AGLSPTSRSE SLNSSFDKYI QGDTSLQEFM ERYTAILEDR YEEEAKANFD  480
AWHGTPELKS PSPFEKQMSL VYTHEIFKNF QVEVLGAAAC HLKKENEDET ATTFSVKDFE  540
DNQNYTVEWN ESKSDIYCSC HSFEYKGYLC RHAIVVLQMS GVFIIPPKYI LQRWTNAAMS  600
RHTIGERVDE VQSKARRYND LCRRAIILGE EGSLSQESYD VALSAIKEAL KQCASLNNCL  660
ENNAKPHDSA IHGVCGVDEE NQCSTTSGAN KTPRRAGSGK EVARNGNSTS KKGKVPQLEA  720
MSFGMQDGHF QMHLIIPESD SYSLVIKSDG RWRSHKSESN ANHGSDPDVF GIESEKGRAN  780
KMKKDCHRGV GRGGVDRKEM E

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008382097.2	0.0	LOW QUALITY PROTEIN: protein FAR1-RELATED SEQUENCE 4
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A251QQB1	0.0	A0A251QQB1_PRUPE; Uncharacterized protein
STRING	XP_008382097.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	0.0	FAR1-related sequence 4

Link Out ? help Back to Top
Phytozome	MDP0000267783

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]