PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000267218
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Trihelix
Protein Properties Length: 705aa    MW: 79108.5 Da    PI: 8.0275
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000267218genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix89.24.6e-2865149187
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                    rW++qe+ aL+++r++m++++r+++lk+plWe+vs+k+ e g+ rs+k+Ckek+en+ k+++++keg++++  ++ +t+++fd+lea
  MDP0000267218  65 RWPRQETVALLKIRSQMDDAFRDSSLKAPLWEDVSRKLGELGYYRSAKKCKEKFENVYKYHRRTKEGRSGK--QEGKTYRFFDELEA 149
                    8********************************************************************96..45557******985 PP
2trihelix796.9e-25406482178
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78 
                    rW++ ev aLi++r+ ++ +++++  k+ lWee+s  m++ g++rs+k+Ckekwen+nk+ykk+ke++k r se+s++
  MDP0000267218 406 RWPRVEVEALINLRTCLDVKYQEAGPKGSLWEEISVGMKRLGYNRSAKRCKEKWENINKYYKKVKESSKTR-SEDSKN 482
                    8********************************************************************98.566655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.001762124IPR001005SANT/Myb domain
CDDcd122036.67E-2464129No hitNo description
PfamPF138372.8E-1864149No hitNo description
PROSITE profilePS500906.6965122IPR017877Myb-like domain
SMARTSM007170.045403465IPR001005SANT/Myb domain
PfamPF138373.3E-16405479No hitNo description
PROSITE profilePS500906.806406463IPR017877Myb-like domain
CDDcd122031.10E-27406470No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MPAVPAAVPD KSSTMFPSGG SSGVEAAHTA EVVPEGSHES KTTNVLSNSV QEENKGDRNL  60
SGGKRWPRQE TVALLKIRSQ MDDAFRDSSL KAPLWEDVSR KLGELGYYRS AKKCKEKFEN  120
VYKYHRRTKE GRSGKQEGKT YRFFDELEAF AHQNHHHPST IQPKPQVVLW PTMNNNHPNN  180
PSLVVPHVTI TTLPPSSTPS ILTPTSGSLP NGPQISPPHI TISPLNLSHQ NINGFKPNLA  240
TNNLFSSSTS STASDEEFQV QPRNKRKRKW KYFFRRLTKD VLEKQESLQE KFLEAIAKCE  300
HQRMAREEAW RMEEMARMSK EHEILAKERS LAAAKDAAVI EFLHKVSGQQ NLTNMQALEA  360
PSSQPQPMSV LMPPPLPAPV AVTRSSNFEV PKLNKGESPF PAGSTRWPRV EVEALINLRT  420
CLDVKYQEAG PKGSLWEEIS VGMKRLGYNR SAKRCKEKWE NINKYYKKVK ESSKTRSEDS  480
KNIKKNNKNA ASYVEKPIAE TMQPLIKVQP DQPVIEDIER ENGERNGDDE DGESTEEEDR  540
SDDQMEMKGS MSISEYQQQI KEISNSLITA GASVTDRDLI AATLASLLDD FESSIDSIML  600
CFSSTKLNEL HGFLGSSFPT PQVYAAQYLE SQPFVKQYRG NRGHNSNTHG HNYPHLGSHG  660
SNHSNHHGNN SGYHSFNQSG YCVQCQICGS TSHEAIDCYD RIKIS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028957706.10.0trihelix transcription factor GT-2-like
SwissprotQ391171e-118TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A498JY460.0A0A498JY46_MALDO; Uncharacterized protein
STRINGXP_009368514.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.25e-94Trihelix family protein