PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000266156

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

MYB

Protein Properties

Length: 297aa MW: 33141.7 Da PI: 7.0038

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000266156	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.5	1.8e-14	14	65	1	48
TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd l+ + + +G++ +W +++ g++R++k+c++rw++yl MDP0000266156 14 RGPWSPEEDAALKSYLQSHGSDgtasNWIHLPKKAGLRRCGKSCRLRWLNYL 65 89************************************************97 PP
2	Myb_DNA-binding	45.9	1.3e-14	72	131	2	46
SSS-HHHHHHHHHHHHHTTTT................-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg................tWktIartmgkgRtlkqcksrwqk 46 g +T+eEd ++ ++ +q+G++ +W+ Ia++m+ gRt++++k++w++ MDP0000266156 72 GGFTEEEDSIICNLYNQMGSRqyfltylhflnspnflRWSVIASYMP-GRTDNDVKNYWNT 131 569******************************************.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.811	9	69	IPR017930	Myb domain
SuperFamily	SSF46689	8.2E-22	11	129	IPR009057	Homeodomain-like
SMART	SM00717	3.2E-10	13	67	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-13	14	65	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.1E-22	15	72	IPR009057	Homeodomain-like
CDD	cd00167	1.34E-7	16	65	No hit	No description
SMART	SM00717	2.1E-11	70	135	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	10.427	70	137	IPR017930	Myb domain
Pfam	PF00249	6.9E-12	72	131	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-21	73	137	IPR009057	Homeodomain-like
CDD	cd00167	1.11E-9	74	131	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MGRTPCCDKE NVKRGPWSPE EDAALKSYLQ SHGSDGTASN WIHLPKKAGL RRCGKSCRLR 60 WLNYLRPDIK HGGFTEEEDS IICNLYNQMG SRQYFLTYLH FLNSPNFLRW SVIASYMPGR 120 TDNDVKNYWN TKLKKKLLGG KIKNISSKEP TIANNANFFG IPEAEKPQDS AFSTSEPQVP 180 STLQMLYDVX SGLSADNQTM SLNPDQLYNP KLSGFSDLGA RSRRNYSTTV SLSQEGSSIS 240 DSSSMAGNLY LDQDSGFLMD YGFGVAYDNN VNHYGMSFGD KTSEVGPTGC TDFGDFF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-20	14	137	27	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FR828542	1e-42	FR828542.1 Rosa rugosa mRNA for putative MYB transcription factor (myb9 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008377932.2	0.0	transcription factor MYB87-like
TrEMBL	A0A498J8P8	0.0	A0A498J8P8_MALDO; Uncharacterized protein
STRING	XP_008377932.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF130	34	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65790.1	9e-59	myb domain protein 68

Link Out ? help Back to Top
Phytozome	MDP0000266156