PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000264827
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 434aa    MW: 47267.5 Da    PI: 10.7536
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000264827genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.51.8e-06338364430
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
            HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                    +h+ +Er RR++i +++  L++l+P +
  MDP0000264827 338 SHSLAERARREKISERMKILQDLVPGC 364
                    8************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013751.2E-22169243IPR001372Dynein light chain, type 1/2
SuperFamilySSF546482.88E-20171240No hitNo description
PfamPF012215.0E-19174239IPR001372Dynein light chain, type 1/2
Gene3DG3DSA:3.30.740.106.8E-20174240IPR001372Dynein light chain, type 1/2
SuperFamilySSF474597.59E-8332366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.25E-4332373No hitNo description
PROSITE profilePS508889.572334385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-7337370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007017Biological Processmicrotubule-based process
GO:0030286Cellular Componentdynein complex
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MSNRTTHRRM LAPTEPRPSK HSTSLDPPSL PSKPSSTSNP TSRVNASQRX RSSQSLTDTR  60
LQAKSMSASM DSSKSFLKSN PHPKSFDPRS EKQSKKTEES EKPQKPSKDV VAVVNKKKGA  120
QNGLVGFEEK KKFDSGRRXS VSSAXSGGGG GGGRRRSLSG PQVQLADVLA SNGVRIVSAD  180
MPPFMQIHAV ECARKTHDSL EKFTSKTLAL TLKKEFDGVY GPAWHCIVGT SFGSFVTHSL  240
TQHPTAWRRF GPSAANPVAA VAGWGSEWVT WVRVSKYSGG KRMKLAGSSN ENGSLKAEVE  300
ESSAAGDKKP AEESTKPSEP PKQDFIHVRA RRGQATDSHS LAERARREKI SERMKILQDL  360
VPGCNKFLSM KLEAVNSRMN MNPAIEAFPP KDLGAQPFDA AGLLFGSHTP REYAQSSQPE  420
WLHMQVGGSF ERAT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.127911e-109fruit| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894218e-66KP689421.1 Prunus pseudocerasus isolate Unigene13496 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008374910.21e-142uncharacterized protein LOC103438150
TrEMBLA0A498JN411e-138A0A498JN41_MALDO; Uncharacterized protein
STRINGXP_008374910.11e-168(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-50BIG PETAL P