PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000264827 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | bHLH | ||||||||
Protein Properties | Length: 434aa MW: 47267.5 Da PI: 10.7536 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.5 | 1.8e-06 | 338 | 364 | 4 | 30 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++i +++ L++l+P + MDP0000264827 338 SHSLAERARREKISERMKILQDLVPGC 364 8************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01375 | 1.2E-22 | 169 | 243 | IPR001372 | Dynein light chain, type 1/2 |
SuperFamily | SSF54648 | 2.88E-20 | 171 | 240 | No hit | No description |
Pfam | PF01221 | 5.0E-19 | 174 | 239 | IPR001372 | Dynein light chain, type 1/2 |
Gene3D | G3DSA:3.30.740.10 | 6.8E-20 | 174 | 240 | IPR001372 | Dynein light chain, type 1/2 |
SuperFamily | SSF47459 | 7.59E-8 | 332 | 366 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.25E-4 | 332 | 373 | No hit | No description |
PROSITE profile | PS50888 | 9.572 | 334 | 385 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-7 | 337 | 370 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007017 | Biological Process | microtubule-based process | ||||
GO:0030286 | Cellular Component | dynein complex | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MSNRTTHRRM LAPTEPRPSK HSTSLDPPSL PSKPSSTSNP TSRVNASQRX RSSQSLTDTR 60 LQAKSMSASM DSSKSFLKSN PHPKSFDPRS EKQSKKTEES EKPQKPSKDV VAVVNKKKGA 120 QNGLVGFEEK KKFDSGRRXS VSSAXSGGGG GGGRRRSLSG PQVQLADVLA SNGVRIVSAD 180 MPPFMQIHAV ECARKTHDSL EKFTSKTLAL TLKKEFDGVY GPAWHCIVGT SFGSFVTHSL 240 TQHPTAWRRF GPSAANPVAA VAGWGSEWVT WVRVSKYSGG KRMKLAGSSN ENGSLKAEVE 300 ESSAAGDKKP AEESTKPSEP PKQDFIHVRA RRGQATDSHS LAERARREKI SERMKILQDL 360 VPGCNKFLSM KLEAVNSRMN MNPAIEAFPP KDLGAQPFDA AGLLFGSHTP REYAQSSQPE 420 WLHMQVGGSF ERAT |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.12791 | 1e-109 | fruit| root| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP689421 | 8e-66 | KP689421.1 Prunus pseudocerasus isolate Unigene13496 bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008374910.2 | 1e-142 | uncharacterized protein LOC103438150 | ||||
TrEMBL | A0A498JN41 | 1e-138 | A0A498JN41_MALDO; Uncharacterized protein | ||||
STRING | XP_008374910.1 | 1e-168 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1171 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59640.1 | 2e-50 | BIG PETAL P |
Link Out ? help Back to Top | |
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Phytozome | MDP0000264827 |