PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000263959

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

FAR1

Protein Properties

Length: 761aa MW: 87899.5 Da PI: 5.7785

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000263959	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76	7.4e-24	433	519	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA+e+GFsvr+++skk+ ++geit+++fvC+keg++++e +e+++r t+ gCka+l v ++k g + +t +++ HnH+++ MDP0000263959 433 EFYNNYAREAGFSVRMHSSKKN-KDGEITRKEFVCNKEGSNTKEWIG--DEQKRRGLTKKGCKARLIVVRSKLGGYAITIFDEGHNHPMT 519 6*************999998.8899************9988..8899999*****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.1E-21	433	519	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.8E-32	640	732	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 761 aa Download sequence Send to blast
MCRSTDFHGF QSRRDRLKIR EFFLRFSGLI TREPLPESLT LMYLPRINEN ELEIDGSKIR 60 PDSPAFVTLY RVVSAKVREG EVVFGSRERV GAGDGIRFEV YLREEKVLKG IFRKDERQEW 120 KLECKCVLEG ERVAAEVADA EVCVAVEGHV AMNERVKMVV KKTKKHRKCG FKRLEEIPEE 180 GAVDDEYDES DGCCCNCRSD GGDSEMGSDV EGDDEGELEM DMEGVRWAVD VGIWVVHTAS 240 PTNRAQYQPN HRPSRITFEI SEISVKVNRN CEKNXQTWRL EELTSQELFI NDIRRCNNWD 300 CLGNPLKKTD LEEVYRLGKA CYSHRQFIEN REAVDEIENR NSVMEANEMT IEVTGTDEIP 360 IQVMEAMEAN EMTIEVTGTN EIPVQVMEAN EMQVPMENQS EIVAGICFFY PQVTDEFKPT 420 IGQSFETLDE VLEFYNNYAR EAGFSVRMHS SKKNKDGEIT RKEFVCNKEG SNTKEWIGDE 480 QKRRGLTKKG CKARLIVVRS KLGGYAITIF DEGHNHPMTS PRRRHLLKSH RKVTKCYKIL 540 VDQLDMANIP PHKKFDILGL QVGGIENVGC TQEDLNNYRG KVRNKMKGHD GKMLHDHFLL 600 EQERNSEFTF KIQANEEHKI TQCFWADASS RQAYKLYGDV VIFDTTYNTN RYSMIFAPFM 660 GINNHGQTII FAGAFLSDET KDSFVWLFRE FLNAMPGDAP KMIITDQDPA MTKAIPYCFP 720 NTFHRFCTWH ILDKFSSKLP AMKYRDHYLD FKACIWESET R

Sequence ? help Back to Top

Protein Sequence Length: 761 aa Download sequence Send to blast

MCRSTDFHGF QSRRDRLKIR EFFLRFSGLI TREPLPESLT LMYLPRINEN ELEIDGSKIR  60
PDSPAFVTLY RVVSAKVREG EVVFGSRERV GAGDGIRFEV YLREEKVLKG IFRKDERQEW  120
KLECKCVLEG ERVAAEVADA EVCVAVEGHV AMNERVKMVV KKTKKHRKCG FKRLEEIPEE  180
GAVDDEYDES DGCCCNCRSD GGDSEMGSDV EGDDEGELEM DMEGVRWAVD VGIWVVHTAS  240
PTNRAQYQPN HRPSRITFEI SEISVKVNRN CEKNXQTWRL EELTSQELFI NDIRRCNNWD  300
CLGNPLKKTD LEEVYRLGKA CYSHRQFIEN REAVDEIENR NSVMEANEMT IEVTGTDEIP  360
IQVMEAMEAN EMTIEVTGTN EIPVQVMEAN EMQVPMENQS EIVAGICFFY PQVTDEFKPT  420
IGQSFETLDE VLEFYNNYAR EAGFSVRMHS SKKNKDGEIT RKEFVCNKEG SNTKEWIGDE  480
QKRRGLTKKG CKARLIVVRS KLGGYAITIF DEGHNHPMTS PRRRHLLKSH RKVTKCYKIL  540
VDQLDMANIP PHKKFDILGL QVGGIENVGC TQEDLNNYRG KVRNKMKGHD GKMLHDHFLL  600
EQERNSEFTF KIQANEEHKI TQCFWADASS RQAYKLYGDV VIFDTTYNTN RYSMIFAPFM  660
GINNHGQTII FAGAFLSDET KDSFVWLFRE FLNAMPGDAP KMIITDQDPA MTKAIPYCFP  720
NTFHRFCTWH ILDKFSSKLP AMKYRDHYLD FKACIWESET R

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028948077.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_008365955.1	0.0	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-69	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	MDP0000263959