PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000263576
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 1564aa    MW: 175148 Da    PI: 5.2757
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000263576genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS434.67.3e-133119915631374
           GRAS    1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsets..eknsseelaalklfsevsPilk 92  
                     lv+lLl+cAeav+++d  la+++L +l+  ++p gd+mqR+a++fteAL+arla + +++ +  ++++ s  + ns e l+++++ ++++P++k
  MDP0000263576 1199 LVHLLLACAEAVAKEDYMLARRYLHHLNRVVTPLGDSMQRVASCFTEALSARLAATLTTTPSXSASKPFSpfPPNSFEILKIYQIVYQACPYIK 1292
                     68****************************************************9666665555444444114569****************** PP

           GRAS   93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186 
                     f+h+taNqaI ea+e+eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+      e ++etg+ L+++A +l+vpfef++ v ++l
  MDP0000263576 1293 FAHFTANQAIFEAFESEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGP----CIEGVKETGRCLTELALSLHVPFEFHA-VGEQL 1381
                     *********************************************************....***************************.7**** PP

           GRAS  187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 
                     edl++++++ + gEalaVn v +lhr+        ++  ++L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p++s 
  MDP0000263576 1382 EDLKPHMFNRRIGEALAVNTVNRLHRVS------VNCLGNLLAMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSA 1469
                     ***************************7......334557****************************************************** PP

           GRAS  281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 
                     +r+kvE+ ++++ei+n+vaceg er+erhe+lekWr+ +e+ GFk+vpls +a++q k ll  ++ dgyr+ e++g+l+lgW+dr+++++SaWr
  MDP0000263576 1470 QRAKVEQYIFAPEIRNIVACEGVERTERHERLEKWRKVMESKGFKSVPLSANAVTQSKILLGLYSCDGYRMTEDKGCLLLGWQDRSIMAASAWR 1563
                     *********************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF747884.87E-127235299IPR016159Cullin repeat-like-containing domain
SuperFamilySSF747884.87E-127355785IPR016159Cullin repeat-like-containing domain
PfamPF030819.7E-109429778IPR004140Exocyst complex protein Exo70
PROSITE profilePS5098567.06911731543IPR005202Transcription factor GRAS
PfamPF035142.5E-13011991563IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006887Biological Processexocytosis
GO:0000145Cellular Componentexocyst
Sequence ? help Back to Top
Protein Sequence    Length: 1564 aa     Download sequence    Send to blast
MEKNLPDKDD QPKPDAPPPD SSAAATIPKP NDDPKSTTTT ATATTSPDGD NKSAGTKPDD  60
DQKPSNPTAE VQDEQNSIAK LDDPNVNNAE TKVYQGKEGD DPDYEIKKFS SMRVNSTRVK  120
DFKAENVEDQ NDPLPVLDED PVPEPEPEPE PEPEPEPEEE PSLDKVSEDL DHCISSLPET  180
EKLENDVVDA LKFPIELPKL VGKFLNLVED EVVAKRDSGD AKVKWCQEPE KDALFLDALD  240
RIGRLSKYLS FLGLKFEGSH GALINHLGSI QHRALLYLEE EFRILLEESR TCTVTDSASG  300
DHKDNKDHKD SXEHSTKGGN NNSGSNKQQD HQDQESSGGA LPDQAESGGG GDELQADQFP  360
GYAQEVANNL NKIAKXMISS GYETECCEVY MISRRHLFDE TLHKLGLEKH SLDDIQKMHW  420
ESLEREIVSW VKAFKECTTV YFSGERKFVE AVFADYPSIS SSLFSNLTKG VMIQLLNFAE  480
GIAISKRSAE KLFKTLDMYE ALREVIPKMD NLFPADCVNE LKHETSNVRT RLGVAAICIF  540
CDLENSIKAE TGRNPVPGGA VHPLTRYTMN YLRYACEYKD TLELVFREHS KIERADSTSR  600
PERGEYEAGE GSGNASDDQS PFYLQLMRVM DLLDSNLETK AKLYKDVALS SIFMMNNGRY  660
ILQKIKGSAE INSCIGETWY RRRSSDLRQY HKNYQRETWG RLLQCLSHEG LSVNGKVAKP  720
VLKERFKSFN ALFDEIHKTQ STWVVSDEQM QSELRVSISA VVIPAYRSFL GRFSQVFDAG  780
RQTEKSGETS KAPRPFLEYR NSSLTFXAAS TPPRNTTDWR KKKDEMATRT TGFMAVTAED  840
RTRAARVASY KDQLVSITMM INALSGSMES VKSENSCTSD LKPPSPTEST TMSMSISECK  900
KTTTPPSSEL DQQSSLTPLS LNFPTLKFEL DDVEVQSPDH SIWDSLFSEQ FDTDFMVLSP  960
VPNNMPNSPQ NGGSATHQNY NYNYNYAQSM QGQSLSGCSP TRFSPHLGAF SSTHNPKGKG  1020
LSPLRRVFNS PVNQYMQPAD QNMQSLPVSI EDFLDDYQRD GFIVAYPTTT SSKMSGSSSQ  1080
XYNHHDHLPA SSTVPSATLD CMPIHNSSRF SRSESEASLV TAGNSQLTQE SSRGSGYQQM  1140
GGAPLSQQLQ QERMQEKQQQ PLMQPHKHHQ HQHQQQQNLH YNMMPPMAHE QEQDSGLQLV  1200
HLLLACAEAV AKEDYMLARR YLHHLNRVVT PLGDSMQRVA SCFTEALSAR LAATLTTTPS  1260
XSASKPFSPF PPNSFEILKI YQIVYQACPY IKFAHFTANQ AIFEAFESEE RVHVIDLDIL  1320
QGYQWPAFMQ ALAARPGGAP FLRITGVGPC IEGVKETGRC LTELALSLHV PFEFHAVGEQ  1380
LEDLKPHMFN RRIGEALAVN TVNRLHRVSV NCLGNLLAMI RDQAPNIVTL VEQEASHNGP  1440
YFLGRFLEAL HYYSAIFDSL DATFPPDSAQ RAKVEQYIFA PEIRNIVACE GVERTERHER  1500
LEKWRKVMES KGFKSVPLSA NAVTQSKILL GLYSCDGYRM TEDKGCLLLG WQDRSIMAAS  1560
AWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-901206156226378Protein SCARECROW
5b3h_A1e-901206156225377Protein SCARECROW
5b3h_D1e-901206156225377Protein SCARECROW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008341257.20.0exocyst complex component EXO70B1-like
TrEMBLA0A498HH640.0A0A498HH64_MALDO; Exocyst subunit Exo70 family protein
STRINGXP_008341257.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94703243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-91RGA-like 1