PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000262800
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family CAMTA
Protein Properties Length: 713aa    MW: 81203.2 Da    PI: 5.2783
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000262800genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1174.41.5e-541732883117
           CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 
                    +e ++rwlk+ e++ iL+n++k+++++ ++++p+sgsl+L+n++++r+fr+DG++w+kkkdg+tv E+he+LKvg+ve+l+cyYah+e+np+fqrr
  MDP0000262800 173 QEaQTRWLKPVEVLFILQNHDKYKFATVPPQQPSSGSLFLFNKRILRFFRRDGHQWRKKKDGRTVGEAHERLKVGNVETLNCYYAHGEDNPSFQRR 268
                    5669******************************************************************************************** PP

           CG-1  98 cywlLeeelekivlvhylev 117
                    +yw+L+ ++e+ivlvhy+e+
  MDP0000262800 269 SYWMLDPAYEHIVLVHYRET 288
                    ******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143779.189168294IPR005559CG-1 DNA-binding domain
SMARTSM010761.8E-74171289IPR005559CG-1 DNA-binding domain
PfamPF038593.4E-47174287IPR005559CG-1 DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MGGYCRHVTA RQSAPFPRFP FFTTVKQYVH QRDNVCGLHL PILVPLLSPA VSCRYYFHPY  60
ILTSMIPEDS GSFPVQGERD SAHLRSGSRP RFRSLFLQSP NFDPRVCSAD RLRFSNARKS  120
NAFSAVRQFL DFSAADHDAI SDLKFVFVLS IGNCLTLFMS YDVSGYNIND LFQEAQTRWL  180
KPVEVLFILQ NHDKYKFATV PPQQPSSGSL FLFNKRILRF FRRDGHQWRK KKDGRTVGEA  240
HERLKVGNVE TLNCYYAHGE DNPSFQRRSY WMLDPAYEHI VLVHYRETNE GKPSTGSFVQ  300
SPVSSSFSHS PSPNTTHPGS ISIFSDLREP YQNLSSPGSL EVSSDIVIKK NGRENPENLY  360
GTGELDSLTK LDVNQALRQL EEQLSLDEDS FKGFVDDNPN ALDILDYSDI ANQDQFPAFN  420
GPKYVEHDRF YNEPARMQGN ADYSGEHQIV DREFKDGNKE SATWKEFLDP HKISSVLKSE  480
EKSLYILDRN VSVAKKENPA SSSSGPTEVQ EHCQWLNYKG NIVDNYSLPL PQEVDSFNLS  540
PYSSVTGTHS DYYTQLFEQG QIGSLESDVS LTVAQNQKFT IREISPEWGY ATEATKLILV  600
NEVAVVEGDY LKALSFGEYK GIKQWEAKSR ASDSYWVLGT ERSKRNGLPG NFDQELFRGI  660
DKLVRMRGYQ SDTDPDSDPE DEAEAELEEE PDVDPEPAQL LLLYHRPRLQ QTD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.153194e-84bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008389876.10.0calmodulin-binding transcription activator 4-like
TrEMBLA0A498ID270.0A0A498ID27_MALDO; Uncharacterized protein
STRINGXP_008389875.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45482950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.18e-76Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains