PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000262210
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bZIP
Protein Properties Length: 534aa    MW: 59899.7 Da    PI: 10.228
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000262210genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.44.2e-10167207545
                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                    k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  MDP0000262210 167 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 207
                    788*************************9777777666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.7E-9163226IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415165209IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.75E-7167210No hitNo description
PfamPF001703.3E-7167207IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.9E-7168211No hitNo description
PROSITE patternPS000360170185IPR004827Basic-leucine zipper domain
PfamPF141443.8E-32249324IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MGSRRVKVGA NDGSKVVTDM PSFVPPVPTP NPTGTEGSSI RSSQISDFGT LEQTLGFRIE  60
DAVDIGRSPM FSQNKLNRQA VGSSVAQFGA LNKLMPLQKE PQPNLLSVSR SNHENWGESN  120
MADGSPRTDT STDDTEDKNQ KIERNQMTAL LASDSSDRSK EKSGDQKTLR RLAQNREAAR  180
KSRLRKKAYV QQLESSRLKL TQLEQELQRA RQQGIFISSS GDQSHSMSGN GALAFDVEYA  240
RWLEEHNRQI NELRAAVNSH AGDTELRTVI DNVIAHYNDI FRLKGTAAKA DVFHILSGMW  300
KTPAERCFMW IGGFRSSELL KLLVSQLEPL TEQQLVGIYN LQQSSQQAED ALSQGMEALQ  360
QSLSETLASG SPAPSGSSGN VANYMGQMAM AMGKLGTLDG FLRQADNLRQ QTLQQMHRIL  420
TTRQSARALL AINDYFSRLR ALSSLWLARP REFRRLCAQK QRCGVAFEDV FFLSCNNISL  480
FLFEEARRFY LLRHPKSYQE RQTARAIHDP YSTLQLVTKQ NQTKKLSTVR MKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.23830.0bud| flower| fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008350323.10.0transcription factor HBP-1b(c38)-like isoform X1
RefseqXP_028945346.10.0transcription factor HBP-1b(c38)-like isoform X1
SwissprotO241600.0TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A498II750.0A0A498II75_MALDO; Uncharacterized protein
STRINGXP_008350323.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14703494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-147TGACG motif-binding factor 6