PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000262141
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family SBP
Protein Properties Length: 425aa    MW: 47182.9 Da    PI: 8.1716
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000262141genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP124.83.6e-39178255178
                    --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
            SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                    +CqvegC++ l +akeyhrrhkvC +hska+ v+v g+ qrfCqqCsrfh +sefDe+krsCrrrLa+hnerrrk+++
  MDP0000262141 178 RCQVEGCHVALLNAKEYHRRHKVCAMHSKASRVTVLGQDQRFCQQCSRFHVVSEFDESKRSCRRRLAGHNERRRKSSN 255
                    6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.0E-32176240IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.505176253IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.35E-37177257IPR004333Transcription factor, SBP-box
PfamPF031104.0E-30179252IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MEIGGNMDML SHDVNNFSSR GQNGSNNSQL PNSWGIWDTT TTSHTTAAPT NNNNHVLYST  60
AATAVTVAAI GEEASSSSTT GGHALFTGHP LHHQFSNMYS CWADHGGGPH FHQDPHLMCL  120
KLGKRHYFED HGNHAPPLDE RHVAGFPVGX MSKKGKAAAA AAQLYGAAQP LALKVVPRCQ  180
VEGCHVALLN AKEYHRRHKV CAMHSKASRV TVLGQDQRFC QQCSRFHVVS EFDESKRSCR  240
RRLAGHNERR RKSSNDPLAR SSSQDKKLMT GRFQYLSSMT GRALSLLSSK TTLDSWVSTS  300
DLSSRSSTAL RELIAENRAA NLARQLMSSD RNWDSSSHNN NATEDLFCDH GQSWSNSLEP  360
HQHQMFPENQ HGWDRFHESS GAHLTLDLRR PPSQAYGFMS ERAKTKAEED QECDLWNSFQ  420
GTSVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-281792521184squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008375794.20.0squamosa promoter-binding-like protein 7 isoform X1
TrEMBLA0A498JCH40.0A0A498JCH4_MALDO; Uncharacterized protein
STRINGXP_008375794.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96132738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.15e-33squamosa promoter binding protein-like 9