PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000262020
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 455aa    MW: 49293.1 Da    PI: 7.8163
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000262020genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.56.5e-053363741255
                    HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  MDP0000262020 336 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 374
                    7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.528324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.22E-5334378No hitNo description
SuperFamilySSF474599.42E-11334386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-9338381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MESANFHHQQ HHQLQENLVR SSSLAATTPS CYAVGTKPAW TPTTTLSSSG NSLPNSSLDT  60
LNSSLVPDLG FHWLTNITSD HQSAHDLVKI KEELSSSSSL DHHSSFPKLT EMLTAATSSS  120
SIDHDQYFQF MKNEQKDQMI MNDLSEKLLL KTLSSRCQMN STINSHHHQI PPSARDHHQF  180
YSNDHHHLLH NSNLMGGVPL AMPSRSAGHF SQIYPSINVS NLNRSLSSST LSSSSLDMKL  240
QAMDLLGASA GFSTGDGSSF STTPTNSHDT LGLYNGRHNS FGTLEQMHQG KVSSFDNEMT  300
EVKRPGSLIE TKATQAAAPK KSRLESRNSC PPFKVRKEKL GDRIAALQQL VAPFGKTDTA  360
SVLMEAIGYI KFLQNQVETL SVPYMKSSRN KTSKTILQGG MAEINGNGET KRDLISRGLC  420
LVPLSCMSYV TGDVGGGGGN GGGSLWPTPN FGGGT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1430443TGDVGGGGGNGGGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008388028.10.0transcription factor bHLH110-like isoform X1
RefseqXP_028950725.10.0transcription factor bHLH110-like isoform X1
RefseqXP_028950726.10.0transcription factor bHLH110-like isoform X1
TrEMBLA0A498HSI70.0A0A498HSI7_MALDO; Uncharacterized protein
STRINGXP_008388027.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40453254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.15e-58bHLH family protein