PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

FAR1

Protein Properties

Length: 792aa MW: 90291.1 Da PI: 6.9607

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000261311	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	98.1	9.4e-31	85	179	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+++GFs+r+s s++s+r+g i++r fvC keg+r +++ k + +++r+raetr+gCka+l++k +++g+w+v+ +++eHnHel+p MDP0000261311 85 FYNSYARRIGFSTRVSMSRRSRRDGAIIQRSFVCAKEGFRVNKNGKsgsdcEGRAKRPRAETRVGCKAMLVIKIHDSGRWVVSAFVKEHNHELVP 179 9*************************************999888899999999************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-28	85	179	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.3E-31	300	392	IPR018289	MULE transposase domain
Pfam	PF04434	1.9E-10	568	614	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.917	580	616	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.3E-7	591	618	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 792 aa Download sequence Send to blast
MEFEPLSLGS DDVLEFDMMG LGYIDQSVDH DDVLHDSSAT ATPTPTGSDV VSSVAVLEHY 60 IPEGDSSLEP CEGMEFESEE AAKAFYNSYA RRIGFSTRVS MSRRSRRDGA IIQRSFVCAK 120 EGFRVNKNGK SGSDCEGRAK RPRAETRVGC KAMLVIKIHD SGRWVVSAFV KEHNHELVPP 180 DKVHSLRSHR HVSGSAKSLI DTLQGAGIGP RGIMSALVKE YGGIRNVGFT ERDCRNYMRS 240 CKQRTLGGDT QLLLDYLKDR QAKDPAFFFA VQGDEDQCMG NFFWVDPKAR NDYTYFGDTV 300 TFDTTYRSNR YRLPFAPFTG VNHHGQPVFF GCALLINESE ASFLWLFKTW LMAMSGQPPL 360 SITTDHDRVI TLAITQVFPE TRHRFCKWHI FKECQEKLSS VLCEHSNFES ELHKCVNLSE 420 SIEEFESCWL SLIGKYDLRE HKWLQSMYAD RQQWVPGYLR GTFFAEMSVT QCSDSMNSYF 480 DGYVNASTTL QLFVKQYEKA VESRYEKEVR ADYDTINTAP VLKTPSPMEK QAAGLYTRKL 540 FTKFQEELVE TLTFLATKVE DEEAGSIYQV AKFGESHKAY TVRFNVHEMK AFCSCQMFEF 600 SGLLCAHILT VFRVTNVLTL PSHFILKRWT RNAKSGVILE EHAGDLLSKS QESLTVRYNN 660 LRHEALKYVD EGITTAEIYN VAMDALQVAA NKVATEMQNG RRAATTNTAG REDGFRLGNQ 720 SNNTFGDHKR GFETLSADHQ DKKMQKLERQ LERARRKCEW YRANLLSVLK DIEEQKLELS 780 VKVENIKLRM KE

Sequence ? help Back to Top

Protein Sequence Length: 792 aa Download sequence Send to blast

MEFEPLSLGS DDVLEFDMMG LGYIDQSVDH DDVLHDSSAT ATPTPTGSDV VSSVAVLEHY  60
IPEGDSSLEP CEGMEFESEE AAKAFYNSYA RRIGFSTRVS MSRRSRRDGA IIQRSFVCAK  120
EGFRVNKNGK SGSDCEGRAK RPRAETRVGC KAMLVIKIHD SGRWVVSAFV KEHNHELVPP  180
DKVHSLRSHR HVSGSAKSLI DTLQGAGIGP RGIMSALVKE YGGIRNVGFT ERDCRNYMRS  240
CKQRTLGGDT QLLLDYLKDR QAKDPAFFFA VQGDEDQCMG NFFWVDPKAR NDYTYFGDTV  300
TFDTTYRSNR YRLPFAPFTG VNHHGQPVFF GCALLINESE ASFLWLFKTW LMAMSGQPPL  360
SITTDHDRVI TLAITQVFPE TRHRFCKWHI FKECQEKLSS VLCEHSNFES ELHKCVNLSE  420
SIEEFESCWL SLIGKYDLRE HKWLQSMYAD RQQWVPGYLR GTFFAEMSVT QCSDSMNSYF  480
DGYVNASTTL QLFVKQYEKA VESRYEKEVR ADYDTINTAP VLKTPSPMEK QAAGLYTRKL  540
FTKFQEELVE TLTFLATKVE DEEAGSIYQV AKFGESHKAY TVRFNVHEMK AFCSCQMFEF  600
SGLLCAHILT VFRVTNVLTL PSHFILKRWT RNAKSGVILE EHAGDLLSKS QESLTVRYNN  660
LRHEALKYVD EGITTAEIYN VAMDALQVAA NKVATEMQNG RRAATTNTAG REDGFRLGNQ  720
SNNTFGDHKR GFETLSADHQ DKKMQKLERQ LERARRKCEW YRANLLSVLK DIEEQKLELS  780
VKVENIKLRM KE

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017183920.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	M5W6V8	0.0	M5W6V8_PRUPE; Uncharacterized protein
STRING	XP_008357828.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	MDP0000261311

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]