PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000259495 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | bHLH | ||||||||
Protein Properties | Length: 253aa MW: 28496.9 Da PI: 8.0533 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45 | 2e-14 | 76 | 129 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR++iNs ++ Lr+llP + ++ +kKls ++ ++v+Y+ +Lq MDP0000259495 76 KKLNHNASERDRRKKINSLYSSLRSLLPAD-QPLQKKLSIPNTVSRVVKYVPELQ 129 6789*************************6.467777**************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.049 | 75 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.09E-4 | 76 | 133 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.7E-12 | 76 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-14 | 76 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.7E-12 | 76 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.2E-9 | 81 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MLALSPPMFS TIGWPIDQDP TSHDYYKDHI TTTNDQTAES SSLRILPSGR PQSELDVSTP 60 STTIRGECSS VSPVAKKLNH NASERDRRKK INSLYSSLRS LLPADQPLQK KLSIPNTVSR 120 VVKYVPELQK QVEGLIRKRE ELLSRIXKQE SALHEEKNQI KSAARSSLSA VSACQLNDRE 180 VAIQISSLKT KNNLLSDILL NLEEEGLQIL NASSFESSGG RVFYNLQFQV ERTYRLECES 240 LSDKLMSFYG QEY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008389282.2 | 0.0 | transcription factor ORG2-like | ||||
TrEMBL | A0A498HZQ1 | 1e-171 | A0A498HZQ1_MALDO; Uncharacterized protein | ||||
STRING | XP_008389282.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2402 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 3e-52 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000259495 |