PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Expression |

Orthologous Group |

Basic Information? help Back to Top

TF ID

MDP0000259094

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Dof

Protein Properties

Length: 728aa MW: 80324.4 Da PI: 9.8185

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000259094	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.4	6.6e-38	306	364	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg rknk++ MDP0000259094 306 TENLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGYRKNKSV 364 67899***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.5E-32	308	363	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.161	309	363	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	5.0E-26	309	362	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	311	347	IPR003851	Zinc finger, Dof-type
Pfam	PF14223	1.0E-12	611	721	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 728 aa Download sequence Send to blast
MAKYVLYVTL KILNNPKRLI LFFVIVEIFG KGLLELIDDD FCWWWHGDRL GVVGGKRGIG 60 IGNYPIGESE RKMRLILRVI RRETSKXLTQ KKQLIRTEQD RXLPLPPPRA AQCPFPCNII 120 DVFCRLLLPS RCPTFTGKSM SVCSLSIILR LALRTARAVR YVAQFARLTK RTSQFXFYLY 180 DQGLLNVELL GTFHTIQPLQ CEIVHDRIKQ LVNTAKLSVK MISMNVFQYS ILIDLRIRVN 240 KKTKMIQELF GGAGLNNIAG GGERKSLTFH GGTTSSPSLS PSPSPSSSTT TTATATTTAT 300 AGLSNTENLR CPRCDSSNTK FCYYNNYNLT QPRHFCKTCR RYWTKGGALR NVPIGGGYRK 360 NKSVTGSTAS IXKTAAGKLK TVVSEIGRSG FGAGFDQEVQ ASPILWGSXQ NSHLLALLKA 420 SHHQNPNPNQ LCNSVNVKEE GGMNMIGSHM MTTEAIAMST ARTLGLDPVC QAPSLGLCSS 480 FWRNNNQXQP PPSHHQQNGF IVGHEVQSSN IGIQELFQRL TPSTSQSCSY YSDQLNNVVA 540 SSSSSSLSSY STSSILDSSP VVGGGEMGYS WNPAFTAXYI LEIHGMEDVV TTNSKLLKKL 600 ADGSVNPNYS RDKLVLSWIK ATCSPSIRSI LIPCTXGFDA WSLLAKCFSP LSKTRIRTLR 660 GQLCTLKKDS EQSMSGYLMH AKSLADSLHI IGSSTTIEEP IESLLDSLGP EYKEFSTAVH 720 LRPSLYLV

Sequence ? help Back to Top

Protein Sequence Length: 728 aa Download sequence Send to blast

MAKYVLYVTL KILNNPKRLI LFFVIVEIFG KGLLELIDDD FCWWWHGDRL GVVGGKRGIG  60
IGNYPIGESE RKMRLILRVI RRETSKXLTQ KKQLIRTEQD RXLPLPPPRA AQCPFPCNII  120
DVFCRLLLPS RCPTFTGKSM SVCSLSIILR LALRTARAVR YVAQFARLTK RTSQFXFYLY  180
DQGLLNVELL GTFHTIQPLQ CEIVHDRIKQ LVNTAKLSVK MISMNVFQYS ILIDLRIRVN  240
KKTKMIQELF GGAGLNNIAG GGERKSLTFH GGTTSSPSLS PSPSPSSSTT TTATATTTAT  300
AGLSNTENLR CPRCDSSNTK FCYYNNYNLT QPRHFCKTCR RYWTKGGALR NVPIGGGYRK  360
NKSVTGSTAS IXKTAAGKLK TVVSEIGRSG FGAGFDQEVQ ASPILWGSXQ NSHLLALLKA  420
SHHQNPNPNQ LCNSVNVKEE GGMNMIGSHM MTTEAIAMST ARTLGLDPVC QAPSLGLCSS  480
FWRNNNQXQP PPSHHQQNGF IVGHEVQSSN IGIQELFQRL TPSTSQSCSY YSDQLNNVVA  540
SSSSSSLSSY STSSILDSSP VVGGGEMGYS WNPAFTAXYI LEIHGMEDVV TTNSKLLKKL  600
ADGSVNPNYS RDKLVLSWIK ATCSPSIRSI LIPCTXGFDA WSLLAKCFSP LSKTRIRTLR  660
GQLCTLKKDS EQSMSGYLMH AKSLADSLHI IGSSTTIEEP IESLLDSLGP EYKEFSTAVH  720
LRPSLYLV

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.30421	0.0	stem

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	3e-39	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7219	32	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	4e-33	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	MDP0000259094