PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000258862

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

MYB_related

Protein Properties

Length: 376aa MW: 42353.3 Da PI: 10.0526

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000258862	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.8	2.8e-09	5	36	1	32
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +++WT+eE+ l+ +v ++G g W+tI + MDP0000258862 5 KQKWTAEEESALKAGVIKHGAGKWRTILKDPE 36 79*************************99765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.098	1	59	IPR017930	Myb domain
SuperFamily	SSF46689	3.43E-10	2	50	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-9	4	58	IPR009057	Homeodomain-like
Pfam	PF00249	4.6E-6	5	34	IPR001005	SANT/Myb domain
CDD	cd11660	1.18E-12	6	50	No hit	No description
PROSITE profile	PS51504	22.336	75	144	IPR005818	Linker histone H1/H5, domain H15
SMART	SM00526	1.0E-7	76	139	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	1.31E-14	80	153	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	7.2E-13	81	145	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	4.0E-7	82	137	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MGAPKQKWTA EEESALKAGV IKHGAGKWRT ILKDPEFSGV LYTRSNVDLK FLRTNNSCAI 60 QQVDLFVNVI HDXSKGSDWL DNLIMEAITR LKEPGGSNKT TIAAYIEDEY WPPQDFKRLL 120 SEKLKFLTAS RKLIKVKRRY RIAPTPALSE KRRNTSMYPF EGRQVASAFE GRRMASPFEG 180 RRMASPFEGR PMVSPFEGRY MVSPKFDNDE ATIMMKAQID WELAKMRTMT PREATLAAAQ 240 AVKEAEAAIA EAEEAAREAE AAEADAEAAQ AFAEAAMKTL KGRNAAKTIE AEAAVIFVFE 300 GDFCYPPRSA LPCAFRVGSF LLTRGLKAYA VIGRLIHLLQ QRRRMLVARQ LQACDFHVWK 360 KESELTKNRR WGPLAX

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MGAPKQKWTA EEESALKAGV IKHGAGKWRT ILKDPEFSGV LYTRSNVDLK FLRTNNSCAI  60
QQVDLFVNVI HDXSKGSDWL DNLIMEAITR LKEPGGSNKT TIAAYIEDEY WPPQDFKRLL  120
SEKLKFLTAS RKLIKVKRRY RIAPTPALSE KRRNTSMYPF EGRQVASAFE GRRMASPFEG  180
RRMASPFEGR PMVSPFEGRY MVSPKFDNDE ATIMMKAQID WELAKMRTMT PREATLAAAQ  240
AVKEAEAAIA EAEEAAREAE AAEADAEAAQ AFAEAAMKTL KGRNAAKTIE AEAAVIFVFE  300
GDFCYPPRSA LPCAFRVGSF LLTRGLKAYA VIGRLIHLLQ QRRRMLVARQ LQACDFHVWK  360
KESELTKNRR WGPLAX

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.24036	1e-137	leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000269\|PubMed:19102728}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028965510.1	1e-151	telomere repeat-binding factor 1-like
Refseq	XP_028965511.1	1e-151	telomere repeat-binding factor 1-like
Swissprot	Q8VWK4	5e-58	TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBL	A0A498IYQ1	1e-149	A0A498IYQ1_MALDO; Uncharacterized protein
STRING	XP_008368762.1	1e-150	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1453	33	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	2e-58	telomere repeat binding factor 1

Link Out ? help Back to Top
Phytozome	MDP0000258862

Publications ? help Back to Top
Alexandrov NN, et al. Features of Arabidopsis genes and genome discovered using full-length cDNAs. Plant Mol. Biol., 2006. 60(1): p. 69-85 [PMID:16463100] Schrumpfová PP, et al. Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase. Plant J., 2014. 77(5): p. 770-81 [PMID:24397874] Liang SC, et al. Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2. PLoS Genet., 2015. 11(12): p. e1005660 [PMID:26642436] Fulcher N,Riha K Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana. Front Genet, 2015. 6: p. 349 [PMID:26779251] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]