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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000258046 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB | ||||||||
Protein Properties | Length: 469aa MW: 52293.1 Da PI: 7.7506 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.2 | 6e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+ Ed +++ +v ++G g+W++++++ g++R++k+c++rw +yl MDP0000258046 14 RGLWTAAEDAKILAYVSKYGVGNWTLVPKKAGLNRCGKSCRLRWTNYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.6 | 8.1e-15 | 68 | 110 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++T++E++ +++++k G++ W+ Ia+ ++ gRt++++k++w++ MDP0000258046 68 DNFTPQEEQHIINLHKAIGSR-WSHIAKQLP-GRTDNDVKNYWNT 110 68*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.0E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.167 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.1E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.51E-11 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.531 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 4.6E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.01E-10 | 69 | 112 | No hit | No description |
Pfam | PF00249 | 2.4E-13 | 69 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF15697 | 1.2E-9 | 373 | 433 | IPR031421 | Protein of unknown function DUF4666 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0052545 | Biological Process | callose localization | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
MGRPPCCDKS NVKRGLWTAA EDAKILAYVS KYGVGNWTLV PKKAGLNRCG KSCRLRWTNY 60 LRPDLKHDNF TPQEEQHIIN LHKAIGSRWS HIAKQLPGRT DNDVKNYWNT KLKKKLSKMG 120 IDPVTHKPYS QILSDYGNIS GLPTAAGNQL SYFFKFSNRA FAPEPEPSSG ITGIPYTRVM 180 MNPNINGQGS EHNSCDSTLS LGFLAHRFQE SVQIEQPHFL NEVTSSCSSS SSPRATDHQL 240 ISQPTYACRE SHEAQVTPSS SPFNWSEFLL HDPFASADPF ASADHLKQEQ DLHDVVMSAL 300 ENPKLGVQGN SDAIEGCDFG GQRSNGLLDQ QASSSSMSSF VETILDQDIK EGDRXKTDET 360 KQDGDRDXKY RSMTALQRSA TSFRRQGSSG LIWEDKIQVL XKKPTLKVXI SMNKTDGEEH 420 PNXDEGFRER KDADSHSSPD SSLRSKPEEN VHKCSLCTVF GRCMRPPAA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-28 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009335796.1 | 0.0 | PREDICTED: transcription factor MYB35 | ||||
TrEMBL | A0A498HEC5 | 0.0 | A0A498HEC5_MALDO; Uncharacterized protein | ||||
STRING | XP_008341741.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2942 | 34 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28470.1 | 8e-77 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000258046 |